Results 81 - 88 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 8948 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
|||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 8903 | 0.96 | 0.032919 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
|||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 8839 | 0.85 | 0.149378 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUUUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
|||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 8813 | 0.71 | 0.778902 |
Target: 5'- gCUAGCUUcgacaaauuuuaccGaGUcCAGGCCGGCUUGGGCc -3' miRNA: 3'- -GAUUGAA--------------C-CAaGUUCGGCCGGAUCUG- -5' |
|||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 8794 | 0.86 | 0.141248 |
Target: 5'- gCUAGCUUGGccCAAGCCGGgCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCgGAUCUG- -5' |
|||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 8776 | 0.71 | 0.801719 |
Target: 5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5' |
|||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 8729 | 0.97 | 0.028358 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUGGACa -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
|||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 8595 | 0.68 | 0.893292 |
Target: 5'- uUAGCUUcgacaaauuuuaccGuGUcCAGGCCGGCUUGGGCc -3' miRNA: 3'- gAUUGAA--------------C-CAaGUUCGGCCGGAUCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home