Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28326 | 3' | -50.7 | NC_005905.1 | + | 49111 | 0.83 | 0.224985 |
Target: 5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3' miRNA: 3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 49021 | 0.83 | 0.224985 |
Target: 5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3' miRNA: 3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 48976 | 0.83 | 0.224985 |
Target: 5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3' miRNA: 3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 21998 | 0.83 | 0.202108 |
Target: 5'- gCUAACUUGGccCAAaCCGGCCUAGACu -3' miRNA: 3'- -GAUUGAACCaaGUUcGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17027 | 0.84 | 0.186301 |
Target: 5'- aCUAACUcGGcUCAAGCCGGgCUGGACu -3' miRNA: 3'- -GAUUGAaCCaAGUUCGGCCgGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17707 | 0.84 | 0.181279 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCCUAaACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUcUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 20079 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19910 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19735 | 0.9 | 0.073049 |
Target: 5'- gCUAACUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19515 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19470 | 0.9 | 0.073049 |
Target: 5'- gCUAGCUUGGccCAAGCCGGCUUGGACu -3' miRNA: 3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19907 | 0.71 | 0.801719 |
Target: 5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 19797 | 0.71 | 0.801719 |
Target: 5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17724 | 0.71 | 0.801719 |
Target: 5'- -aGAUUaGGUUuaucgagucCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUUGAaCCAA---------GUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 20183 | 0.7 | 0.820782 |
Target: 5'- -cGGCUUGGgcCAAGCUaGCCUcGACa -3' miRNA: 3'- gaUUGAACCaaGUUCGGcCGGAuCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17527 | 0.67 | 0.943723 |
Target: 5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3' miRNA: 3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17417 | 0.67 | 0.943723 |
Target: 5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3' miRNA: 3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17307 | 0.67 | 0.943723 |
Target: 5'- uUGGCUUGGgcCAAGCUaGCUUcGACa -3' miRNA: 3'- gAUUGAACCaaGUUCGGcCGGAuCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 17797 | 0.67 | 0.95032 |
Target: 5'- gCUAGCUUcGacaaauuuuaucgaaUcCAGGCCGGCUUGGACc -3' miRNA: 3'- -GAUUGAAcC---------------AaGUUCGGCCGGAUCUG- -5' |
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28326 | 3' | -50.7 | NC_005905.1 | + | 9058 | 1.01 | 0.014228 |
Target: 5'- gCUAGCUUGGcUCAAGCCGGCCUGGACu -3' miRNA: 3'- -GAUUGAACCaAGUUCGGCCGGAUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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