miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 3' -50.7 NC_005905.1 + 17422 0.66 0.952982
Target:  5'- gCUAGCUUGGccCAAGCCaaCCUGGuCu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGccGGAUCuG- -5'
28326 3' -50.7 NC_005905.1 + 9032 0.66 0.967284
Target:  5'- gCUAGCUUcgacaaauuuuaccGaGUcCAGGUCGGCUUGGGCc -3'
miRNA:   3'- -GAUUGAA--------------C-CAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21864 0.96 0.030103
Target:  5'- gCUAACUUGGccCAAGCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49201 0.79 0.36444
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCUAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21819 0.96 0.030103
Target:  5'- gCUAACUUGGccCAAGCCGGCCUAGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 22187 0.67 0.927737
Target:  5'- -cAugUUGGgcCAAGCCGGUUUAaauacGACa -3'
miRNA:   3'- gaUugAACCaaGUUCGGCCGGAU-----CUG- -5'
28326 3' -50.7 NC_005905.1 + 8595 0.68 0.893292
Target:  5'- uUAGCUUcgacaaauuuuaccGuGUcCAGGCCGGCUUGGGCc -3'
miRNA:   3'- gAUUGAA--------------C-CAaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49156 0.83 0.224985
Target:  5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49246 0.83 0.224985
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 21956 0.81 0.263382
Target:  5'- --uACUUGGcUCAAGCCGGCCUAaACu -3'
miRNA:   3'- gauUGAACCaAGUUCGGCCGGAUcUG- -5'
28326 3' -50.7 NC_005905.1 + 21684 0.8 0.322627
Target:  5'- gCUAACUUGGccaAAGCCGGCCUAaACu -3'
miRNA:   3'- -GAUUGAACCaagUUCGGCCGGAUcUG- -5'
28326 3' -50.7 NC_005905.1 + 48931 0.79 0.355785
Target:  5'- -aAGCUcGGUcggcUCAAGCCGGUCUAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49066 0.79 0.36444
Target:  5'- -aGGCUcGGUcggcUCAAGCCGGUCUAGAUu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19515 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGUCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49111 0.83 0.224985
Target:  5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19470 0.9 0.073049
Target:  5'- gCUAGCUUGGccCAAGCCGGCUUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 20019 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19845 0.96 0.032919
Target:  5'- gCUAGCUUGGccCAAGCCGGCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 49021 0.83 0.224985
Target:  5'- -aGGCUcGGUuggcUCAAGCCGGUCUAGACu -3'
miRNA:   3'- gaUUGAaCCA----AGUUCGGCCGGAUCUG- -5'
28326 3' -50.7 NC_005905.1 + 19560 0.69 0.872787
Target:  5'- gCUAGCUUGGccCAAGaCGaCCUGGACu -3'
miRNA:   3'- -GAUUGAACCaaGUUCgGCcGGAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.