Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28326 | 5' | -51.7 | NC_005905.1 | + | 11477 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 11866 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 11736 | 1.02 | 0.012112 |
Target: 5'- --aUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- agcAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 21675 | 1.01 | 0.012475 |
Target: 5'- uUCGUCGAAGCUAACUUGGCCaAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGgUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 19946 | 1.01 | 0.013634 |
Target: 5'- uUUGUCGAAGCUAGC-UGGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGaACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 21720 | 0.99 | 0.017788 |
Target: 5'- cUUGUCGAAGCUAACUUGGUUCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 19551 | 0.97 | 0.023887 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGaCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUCgG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 21945 | 0.95 | 0.032995 |
Target: 5'- uUUGUCGAAGCUA-CUUGGCUCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUuGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 22034 | 0.95 | 0.032995 |
Target: 5'- uUUGUCGAAGCUAACUUGGCCaaagCAGGCCu -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGG----GUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 9022 | 0.94 | 0.039324 |
Target: 5'- uUUGUCGAAGCUAACUcuGCCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAacCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 21900 | 0.9 | 0.066283 |
Target: 5'- cUCGUCGAAGCUAACUUGGUUCAAaCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAACCGGGUUcGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 8693 | 0.88 | 0.10167 |
Target: 5'- uUUGUCGAAGCUAAaucGGUCCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUgaaCCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17743 | 0.88 | 0.088242 |
Target: 5'- uUUGUCGAAGCUAACUcGGCaCAAGCCg -3' miRNA: 3'- -AGCAGCUUCGAUUGAaCCGgGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17808 | 0.87 | 0.117007 |
Target: 5'- uUUGUCaGAGCUAGCUUGGCCCAAaCCg -3' miRNA: 3'- -AGCAGcUUCGAUUGAACCGGGUUcGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17458 | 0.86 | 0.123727 |
Target: 5'- uUUGUCaAAGCUAACUcGGCCUAAGCCg -3' miRNA: 3'- -AGCAGcUUCGAUUGAaCCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17348 | 0.86 | 0.123727 |
Target: 5'- uUUGUCaAAGCUAACUcGGCCUAAGCCg -3' miRNA: 3'- -AGCAGcUUCGAUUGAaCCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 17238 | 0.86 | 0.123727 |
Target: 5'- uUUGUCaAAGCUAACUcGGCCUAAGCCg -3' miRNA: 3'- -AGCAGcUUCGAUUGAaCCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 19399 | 0.84 | 0.158601 |
Target: 5'- --aUCcAGGCUAGCUUGGUCCAAGCCg -3' miRNA: 3'- agcAGcUUCGAUUGAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 48972 | 0.8 | 0.282923 |
Target: 5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3' miRNA: 3'- agcAGCUUCGAuUgAACCGGGUUCGG- -5' |
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28326 | 5' | -51.7 | NC_005905.1 | + | 49152 | 0.8 | 0.282923 |
Target: 5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3' miRNA: 3'- agcAGCUUCGAuUgAACCGGGUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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