miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28327 5' -59.2 NC_005905.1 + 17540 0.66 0.648859
Target:  5'- gAUCGAGaccaGGUUGGCUUggGCCa- -3'
miRNA:   3'- -UAGCUCcgagCCAGCCGAGuuCGGcc -5'
28327 5' -59.2 NC_005905.1 + 17430 0.66 0.648859
Target:  5'- gAUCGAGaccaGGUUGGCUUggGCCa- -3'
miRNA:   3'- -UAGCUCcgagCCAGCCGAGuuCGGcc -5'
28327 5' -59.2 NC_005905.1 + 17320 0.66 0.648859
Target:  5'- gAUCGAGaccaGGUUGGCUUggGCCa- -3'
miRNA:   3'- -UAGCUCcgagCCAGCCGAGuuCGGcc -5'
28327 5' -59.2 NC_005905.1 + 17210 0.66 0.648859
Target:  5'- gAUCGAGaccaGGUUGGCUUggGCCa- -3'
miRNA:   3'- -UAGCUCcgagCCAGCCGAGuuCGGcc -5'
28327 5' -59.2 NC_005905.1 + 49377 0.67 0.555888
Target:  5'- -cCGAaaCcCGGUaGGCUCAAGCCGGu -3'
miRNA:   3'- uaGCUccGaGCCAgCCGAGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 21722 0.68 0.535644
Target:  5'- uGUCGAaGCUaacUUGGUUCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgccAGCCGAGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 17130 0.68 0.486284
Target:  5'- uGUCGAaGCUaacUCGGCcCAAGCCGGg -3'
miRNA:   3'- -UAGCUcCGAgccAGCCGaGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 20072 0.69 0.457722
Target:  5'- uAUCGAGuccaGGUCGGCUUggGCCa- -3'
miRNA:   3'- -UAGCUCcgagCCAGCCGAGuuCGGcc -5'
28327 5' -59.2 NC_005905.1 + 21947 0.71 0.330113
Target:  5'- uGUCGAaGCUac-UUGGCUCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgccAGCCGAGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 9065 0.72 0.315211
Target:  5'- uGUCGAaGCUaGcUUGGCUCAAGCCGGc -3'
miRNA:   3'- -UAGCUcCGAgCcAGCCGAGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 19663 0.74 0.214148
Target:  5'- uGUCGAGGCUaGcUUGGCcCAAGCCGGc -3'
miRNA:   3'- -UAGCUCCGAgCcAGCCGaGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 20072 0.75 0.203679
Target:  5'- uGUCGAGGCUaGcUUGGCcCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAgCcAGCCGaGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 48928 0.92 0.012003
Target:  5'- -cCGAaGCUCGGUCGGCUCAAGCCGGu -3'
miRNA:   3'- uaGCUcCGAGCCAGCCGAGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 49241 1.04 0.001819
Target:  5'- uAUUGAGGCUCGGUCGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAGCCGAGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 49151 1.04 0.001819
Target:  5'- uAUCGAGGCUCGGUUGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAGCCGAGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 49106 1.04 0.001819
Target:  5'- uAUCGAGGCUCGGUUGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAGCCGAGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 49016 1.04 0.001819
Target:  5'- uAUCGAGGCUCGGUUGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAGCCGAGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 48971 1.04 0.001819
Target:  5'- uAUCGAGGCUCGGUUGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAGCCGAGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 49061 1.07 0.001006
Target:  5'- uAUCGAGGCUCGGUCGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAGCCGAGUUCGGCC- -5'
28327 5' -59.2 NC_005905.1 + 49286 1.07 0.001006
Target:  5'- uAUCGAGGCUCGGUCGGCUCAAGCCGGu -3'
miRNA:   3'- -UAGCUCCGAGCCAGCCGAGUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.