Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28329 | 3' | -56.1 | NC_005905.1 | + | 48980 | 0.93 | 0.017904 |
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Target: 5'- uCGGUUGGCUCAAGCCGGUCUAGAc-- -3' miRNA: 3'- -GCCAGCCGAGUUCGGCCAGGUCUaaa -5' |
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| 28329 | 3' | -56.1 | NC_005905.1 | + | 49025 | 0.93 | 0.017904 |
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Target: 5'- uCGGUUGGCUCAAGCCGGUCUAGAc-- -3' miRNA: 3'- -GCCAGCCGAGUUCGGCCAGGUCUaaa -5' |
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| 28329 | 3' | -56.1 | NC_005905.1 | + | 49115 | 0.93 | 0.017904 |
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Target: 5'- uCGGUUGGCUCAAGCCGGUCUAGAc-- -3' miRNA: 3'- -GCCAGCCGAGUUCGGCCAGGUCUaaa -5' |
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| 28329 | 3' | -56.1 | NC_005905.1 | + | 49160 | 0.93 | 0.017904 |
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Target: 5'- uCGGUUGGCUCAAGCCGGUCUAGAc-- -3' miRNA: 3'- -GCCAGCCGAGUUCGGCCAGGUCUaaa -5' |
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| 28329 | 3' | -56.1 | NC_005905.1 | + | 49250 | 0.97 | 0.00976 |
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Target: 5'- uCGGUCGGCUCAAGCCGGUCUAGAc-- -3' miRNA: 3'- -GCCAGCCGAGUUCGGCCAGGUCUaaa -5' |
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| 28329 | 3' | -56.1 | NC_005905.1 | + | 49295 | 1.02 | 0.004334 |
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Target: 5'- uCGGUCGGCUCAAGCCGGUCUAGAUUUg -3' miRNA: 3'- -GCCAGCCGAGUUCGGCCAGGUCUAAA- -5' |
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| 28329 | 3' | -56.1 | NC_005905.1 | + | 49205 | 1.02 | 0.004334 |
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Target: 5'- uCGGUCGGCUCAAGCCGGUCUAGAUUUg -3' miRNA: 3'- -GCCAGCCGAGUUCGGCCAGGUCUAAA- -5' |
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| 28329 | 3' | -56.1 | NC_005905.1 | + | 49070 | 1.02 | 0.004334 |
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Target: 5'- uCGGUCGGCUCAAGCCGGUCUAGAUUUg -3' miRNA: 3'- -GCCAGCCGAGUUCGGCCAGGUCUAAA- -5' |
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| 28329 | 3' | -56.1 | NC_005905.1 | + | 48935 | 1.02 | 0.004334 |
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Target: 5'- uCGGUCGGCUCAAGCCGGUCUAGAUUUg -3' miRNA: 3'- -GCCAGCCGAGUUCGGCCAGGUCUAAA- -5' |
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| 28329 | 3' | -56.1 | NC_005905.1 | + | 49340 | 1.06 | 0.002223 |
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Target: 5'- uCGGUCGGCUCAAGCCGGUCCAGAUUUg -3' miRNA: 3'- -GCCAGCCGAGUUCGGCCAGGUCUAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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