miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28330 3' -50.6 NC_005906.1 + 970 0.68 0.907773
Target:  5'- uUGUUGGACUCccGAGU-CGACAAAUc -3'
miRNA:   3'- cACAACCUGAGccCUCAgGUUGUUUG- -5'
28330 3' -50.6 NC_005906.1 + 32514 0.69 0.871118
Target:  5'- uUGUUGGACnCccGAGUCCGACAcauuuGACa -3'
miRNA:   3'- cACAACCUGaGccCUCAGGUUGU-----UUG- -5'
28330 3' -50.6 NC_005906.1 + 11389 0.7 0.837211
Target:  5'- uUGUcGGACUCccGAGUCCGACAcauuuGACa -3'
miRNA:   3'- cACAaCCUGAGccCUCAGGUUGU-----UUG- -5'
28330 3' -50.6 NC_005906.1 + 32600 0.76 0.487684
Target:  5'- uUGUUGGACUCGaGAGUCgAACAcauuuGACa -3'
miRNA:   3'- cACAACCUGAGCcCUCAGgUUGU-----UUG- -5'
28330 3' -50.6 NC_005906.1 + 67686 0.77 0.457071
Target:  5'- uGUGUUGnACUnGnGAGUCCAACAAACg -3'
miRNA:   3'- -CACAACcUGAgCcCUCAGGUUGUUUG- -5'
28330 3' -50.6 NC_005906.1 + 32705 0.78 0.417923
Target:  5'- uGUGUUcGACUCucGAGUCCAACAAACg -3'
miRNA:   3'- -CACAAcCUGAGccCUCAGGUUGUUUG- -5'
28330 3' -50.6 NC_005906.1 + 1085 0.78 0.408458
Target:  5'- uUGUUGGACUCccGAGUCCGACAcauuuGACa -3'
miRNA:   3'- cACAACCUGAGccCUCAGGUUGU-----UUG- -5'
28330 3' -50.6 NC_005906.1 + 1175 0.78 0.408458
Target:  5'- uUGUUGGACUCccGAGUCCGACAcauuuGACa -3'
miRNA:   3'- cACAACCUGAGccCUCAGGUUGU-----UUG- -5'
28330 3' -50.6 NC_005906.1 + 1007 0.79 0.380885
Target:  5'- uUGUUGGACUCccGAGUCCAACAcauuuGACa -3'
miRNA:   3'- cACAACCUGAGccCUCAGGUUGU-----UUG- -5'
28330 3' -50.6 NC_005906.1 + 32388 0.79 0.380885
Target:  5'- uUGUUGGACUCccGAGUCCAACAcauucGACa -3'
miRNA:   3'- cACAACCUGAGccCUCAGGUUGU-----UUG- -5'
28330 3' -50.6 NC_005906.1 + 32436 0.79 0.380885
Target:  5'- uUGUUGGACUCccGAGUCCAACAcauuuGACa -3'
miRNA:   3'- cACAACCUGAGccCUCAGGUUGU-----UUG- -5'
28330 3' -50.6 NC_005906.1 + 67505 0.86 0.140881
Target:  5'- uGUGUUGuACUCuGGAGUCCAACAAACg -3'
miRNA:   3'- -CACAACcUGAGcCCUCAGGUUGUUUG- -5'
28330 3' -50.6 NC_005906.1 + 67597 0.88 0.112371
Target:  5'- aUGUUGGACUCccGAGUCCAACAAACg -3'
miRNA:   3'- cACAACCUGAGccCUCAGGUUGUUUG- -5'
28330 3' -50.6 NC_005906.1 + 1072 0.89 0.086786
Target:  5'- uUGUc-GACUCGGGAGUCCAACAAACg -3'
miRNA:   3'- cACAacCUGAGCCCUCAGGUUGUUUG- -5'
28330 3' -50.6 NC_005906.1 + 32619 0.94 0.045586
Target:  5'- uGUGUcGGACUCGGGnGUCCAACAAACg -3'
miRNA:   3'- -CACAaCCUGAGCCCuCAGGUUGUUUG- -5'
28330 3' -50.6 NC_005906.1 + 67701 0.99 0.021021
Target:  5'- uUGUUGGACUCGGGAGUCCAACAuauuuGACa -3'
miRNA:   3'- cACAACCUGAGCCCUCAGGUUGU-----UUG- -5'
28330 3' -50.6 NC_005906.1 + 11284 1.02 0.013007
Target:  5'- uGUGUcGGACUCGGGAGUCCGACAAACg -3'
miRNA:   3'- -CACAaCCUGAGCCCUCAGGUUGUUUG- -5'
28330 3' -50.6 NC_005906.1 + 1190 1.03 0.011885
Target:  5'- uGUGUcGGACUCGGGAGUCCAACAAACg -3'
miRNA:   3'- -CACAaCCUGAGCCCUCAGGUUGUUUG- -5'
28330 3' -50.6 NC_005906.1 + 1280 1.03 0.011885
Target:  5'- uGUGUcGGACUCGGGAGUCCAACAAACg -3'
miRNA:   3'- -CACAaCCUGAGCCCUCAGGUUGUUUG- -5'
28330 3' -50.6 NC_005906.1 + 1112 1.11 0.003452
Target:  5'- uGUGUUGGACUCGGGAGUCCAACAAACg -3'
miRNA:   3'- -CACAACCUGAGCCCUCAGGUUGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.