miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28330 5' -50.4 NC_005906.1 + 32597 0.66 0.969312
Target:  5'- -cGUUUGUUgGACUCGaGAGUCgAACAc -3'
miRNA:   3'- gcUAAACAG-CUGAGCcCUCAGgUUGU- -5'
28330 5' -50.4 NC_005906.1 + 1082 0.68 0.935631
Target:  5'- -cGUUUGUUgGACUCccGAGUCCGACAc -3'
miRNA:   3'- gcUAAACAG-CUGAGccCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 1172 0.68 0.935631
Target:  5'- -cGUUUGUUgGACUCccGAGUCCGACAc -3'
miRNA:   3'- gcUAAACAG-CUGAGccCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 32704 0.68 0.924527
Target:  5'- ----gUGuUCGACUCucGAGUCCAACAa -3'
miRNA:   3'- gcuaaAC-AGCUGAGccCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 1004 0.69 0.918562
Target:  5'- -cGUUUGUUgGACUCccGAGUCCAACAc -3'
miRNA:   3'- gcUAAACAG-CUGAGccCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 32385 0.69 0.918562
Target:  5'- -cGUUUGUUgGACUCccGAGUCCAACAc -3'
miRNA:   3'- gcUAAACAG-CUGAGccCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 32433 0.69 0.918562
Target:  5'- -cGUUUGUUgGACUCccGAGUCCAACAc -3'
miRNA:   3'- gcUAAACAG-CUGAGccCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 11392 0.72 0.768827
Target:  5'- -cGUUUGUCgGACUCccGAGUCCGACAc -3'
miRNA:   3'- gcUAAACAG-CUGAGccCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 67506 0.73 0.716723
Target:  5'- ----gUGUUGuACUCuGGAGUCCAACAa -3'
miRNA:   3'- gcuaaACAGC-UGAGcCCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 67583 0.75 0.629586
Target:  5'- uCGAUUUGUCaaauauguugGACUCccGAGUCCAACAa -3'
miRNA:   3'- -GCUAAACAG----------CUGAGccCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 32618 0.8 0.375317
Target:  5'- ----gUGUCgGACUCGGGnGUCCAACAa -3'
miRNA:   3'- gcuaaACAG-CUGAGCCCuCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 1123 0.87 0.152387
Target:  5'- -uGUUUGUCaaauguguugGACUCGGGAGUCCAACAa -3'
miRNA:   3'- gcUAAACAG----------CUGAGCCCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 32552 0.87 0.152387
Target:  5'- -uGUUUGUCaaauguguugGACUCGGGAGUCCAACAa -3'
miRNA:   3'- gcUAAACAG----------CUGAGCCCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 11285 0.88 0.12552
Target:  5'- ----gUGUCgGACUCGGGAGUCCGACAa -3'
miRNA:   3'- gcuaaACAG-CUGAGCCCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 1189 0.89 0.115405
Target:  5'- ----gUGUCgGACUCGGGAGUCCAACAa -3'
miRNA:   3'- gcuaaACAG-CUGAGCCCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 1279 0.89 0.115405
Target:  5'- ----gUGUCgGACUCGGGAGUCCAACAa -3'
miRNA:   3'- gcuaaACAG-CUGAGCCCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 67704 0.89 0.106055
Target:  5'- -cGUUUGUUgGACUCGGGAGUCCAACAu -3'
miRNA:   3'- gcUAAACAG-CUGAGCCCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 32506 0.96 0.042174
Target:  5'- uCGAUUUGUCGAauguguuggaCUCGGGAGUCCAACAa -3'
miRNA:   3'- -GCUAAACAGCU----------GAGCCCUCAGGUUGU- -5'
28330 5' -50.4 NC_005906.1 + 1077 1.1 0.00515
Target:  5'- uCGAUUUGUCGACUCGGGAGUCCAACAa -3'
miRNA:   3'- -GCUAAACAGCUGAGCCCUCAGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.