miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28331 3' -52.6 NC_005906.1 + 32604 0.67 0.888654
Target:  5'- uGGACUCGaGAGUCgAACAcAUuuGACa -3'
miRNA:   3'- -CCUGAGCcCUCAGgUUGUuUGcgCUG- -5'
28331 3' -52.6 NC_005906.1 + 1089 0.69 0.823585
Target:  5'- uGGACUCccGAGUCCGACAcAUuuGACa -3'
miRNA:   3'- -CCUGAGccCUCAGGUUGUuUGcgCUG- -5'
28331 3' -52.6 NC_005906.1 + 1179 0.69 0.823585
Target:  5'- uGGACUCccGAGUCCGACAcAUuuGACa -3'
miRNA:   3'- -CCUGAGccCUCAGGUUGUuUGcgCUG- -5'
28331 3' -52.6 NC_005906.1 + 1011 0.69 0.795749
Target:  5'- uGGACUCccGAGUCCAACAcAUuuGACa -3'
miRNA:   3'- -CCUGAGccCUCAGGUUGUuUGcgCUG- -5'
28331 3' -52.6 NC_005906.1 + 32440 0.69 0.795749
Target:  5'- uGGACUCccGAGUCCAACAcAUuuGACa -3'
miRNA:   3'- -CCUGAGccCUCAGGUUGUuUGcgCUG- -5'
28331 3' -52.6 NC_005906.1 + 11385 0.69 0.795749
Target:  5'- cGGACUCccGAGUCCGACAcAUuuGACa -3'
miRNA:   3'- -CCUGAGccCUCAGGUUGUuUGcgCUG- -5'
28331 3' -52.6 NC_005906.1 + 32392 0.72 0.650874
Target:  5'- uGGACUCccGAGUCCAACAcAUuCGACa -3'
miRNA:   3'- -CCUGAGccCUCAGGUUGUuUGcGCUG- -5'
28331 3' -52.6 NC_005906.1 + 67693 0.77 0.387286
Target:  5'- -nACUnGnGAGUCCAACAAACGUGACa -3'
miRNA:   3'- ccUGAgCcCUCAGGUUGUUUGCGCUG- -5'
28331 3' -52.6 NC_005906.1 + 32699 0.89 0.069862
Target:  5'- cGACUCucGAGUCCAACAAACGCGACa -3'
miRNA:   3'- cCUGAGccCUCAGGUUGUUUGCGCUG- -5'
28331 3' -52.6 NC_005906.1 + 67697 0.9 0.064156
Target:  5'- uGGACUCGGGAGUCCAACAuAUuuGACa -3'
miRNA:   3'- -CCUGAGCCCUCAGGUUGUuUGcgCUG- -5'
28331 3' -52.6 NC_005906.1 + 67512 0.92 0.048211
Target:  5'- -uACUCuGGAGUCCAACAAACGCGACa -3'
miRNA:   3'- ccUGAGcCCUCAGGUUGUUUGCGCUG- -5'
28331 3' -52.6 NC_005906.1 + 67601 0.93 0.0383
Target:  5'- uGGACUCccGAGUCCAACAAACGCGACa -3'
miRNA:   3'- -CCUGAGccCUCAGGUUGUUUGCGCUG- -5'
28331 3' -52.6 NC_005906.1 + 32614 1.05 0.006473
Target:  5'- cGGACUCGGGnGUCCAACAAACGCGACa -3'
miRNA:   3'- -CCUGAGCCCuCAGGUUGUUUGCGCUG- -5'
28331 3' -52.6 NC_005906.1 + 1068 1.05 0.006286
Target:  5'- cGACUCGGGAGUCCAACAAACGUGACa -3'
miRNA:   3'- cCUGAGCCCUCAGGUUGUUUGCGCUG- -5'
28331 3' -52.6 NC_005906.1 + 11289 1.06 0.005591
Target:  5'- cGGACUCGGGAGUCCGACAAACGCGAn -3'
miRNA:   3'- -CCUGAGCCCUCAGGUUGUUUGCGCUg -5'
28331 3' -52.6 NC_005906.1 + 32488 1.09 0.003297
Target:  5'- uGGACUCGGGAGUCCAACAAACGUGACa -3'
miRNA:   3'- -CCUGAGCCCUCAGGUUGUUUGCGCUG- -5'
28331 3' -52.6 NC_005906.1 + 1107 1.13 0.001887
Target:  5'- uGGACUCGGGAGUCCAACAAACGCGACa -3'
miRNA:   3'- -CCUGAGCCCUCAGGUUGUUUGCGCUG- -5'
28331 3' -52.6 NC_005906.1 + 32536 1.13 0.001887
Target:  5'- uGGACUCGGGAGUCCAACAAACGCGACa -3'
miRNA:   3'- -CCUGAGCCCUCAGGUUGUUUGCGCUG- -5'
28331 3' -52.6 NC_005906.1 + 1185 1.13 0.001727
Target:  5'- cGGACUCGGGAGUCCAACAAACGCGACa -3'
miRNA:   3'- -CCUGAGCCCUCAGGUUGUUUGCGCUG- -5'
28331 3' -52.6 NC_005906.1 + 1275 1.13 0.001727
Target:  5'- cGGACUCGGGAGUCCAACAAACGCGACa -3'
miRNA:   3'- -CCUGAGCCCUCAGGUUGUUUGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.