Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28331 | 5' | -51.7 | NC_005906.1 | + | 1121 | 0.93 | 0.03738 |
|
Target: 5'- uUUGUCaAAUGUGUUGGACUCGGGAGUc -3' miRNA: 3'- -AACAGcUUACACAACCUGAGCCCUCA- -5' |
|||||||
| 28331 | 5' | -51.7 | NC_005906.1 | + | 1199 | 0.85 | 0.122887 |
|
Target: 5'- uUUGUCaAAUGUGUcGGACUCGGGAGUc -3' miRNA: 3'- -AACAGcUUACACAaCCUGAGCCCUCA- -5' |
|||||||
| 28331 | 5' | -51.7 | NC_005906.1 | + | 1289 | 0.85 | 0.122887 |
|
Target: 5'- uUUGUCaAAUGUGUcGGACUCGGGAGUc -3' miRNA: 3'- -AACAGcUUACACAaCCUGAGCCCUCA- -5' |
|||||||
| 28331 | 5' | -51.7 | NC_005906.1 | + | 11275 | 0.85 | 0.122887 |
|
Target: 5'- uUUGUCaAAUGUGUcGGACUCGGGAGUc -3' miRNA: 3'- -AACAGcUUACACAaCCUGAGCCCUCA- -5' |
|||||||
| 28331 | 5' | -51.7 | NC_005906.1 | + | 32502 | 1.05 | 0.006413 |
|
Target: 5'- uUUGUCGAAUGUGUUGGACUCGGGAGUc -3' miRNA: 3'- -AACAGCUUACACAACCUGAGCCCUCA- -5' |
|||||||
| 28331 | 5' | -51.7 | NC_005906.1 | + | 32550 | 0.93 | 0.03738 |
|
Target: 5'- uUUGUCaAAUGUGUUGGACUCGGGAGUc -3' miRNA: 3'- -AACAGcUUACACAACCUGAGCCCUCA- -5' |
|||||||
| 28331 | 5' | -51.7 | NC_005906.1 | + | 32591 | 0.71 | 0.683042 |
|
Target: 5'- gUGUCGcGUuUGUUGGACUCGaGAGUc -3' miRNA: 3'- aACAGCuUAcACAACCUGAGCcCUCA- -5' |
|||||||
| 28331 | 5' | -51.7 | NC_005906.1 | + | 32628 | 0.77 | 0.398977 |
|
Target: 5'- uUUGUCaAAUGUGUcGGACUCGGGnGUc -3' miRNA: 3'- -AACAGcUUACACAaCCUGAGCCCuCA- -5' |
|||||||
| 28331 | 5' | -51.7 | NC_005906.1 | + | 67496 | 0.69 | 0.807905 |
|
Target: 5'- uUUGUCaAAUGUGUUGuACUCuGGAGUc -3' miRNA: 3'- -AACAGcUUACACAACcUGAGcCCUCA- -5' |
|||||||
| 28331 | 5' | -51.7 | NC_005906.1 | + | 67619 | 0.66 | 0.925207 |
|
Target: 5'- gUGUCGcGUuUGUUGGACUCcaGAGUa -3' miRNA: 3'- aACAGCuUAcACAACCUGAGccCUCA- -5' |
|||||||
| 28331 | 5' | -51.7 | NC_005906.1 | + | 67710 | 0.85 | 0.1264 |
|
Target: 5'- aUGUCGcGUuUGUUGGACUCGGGAGUc -3' miRNA: 3'- aACAGCuUAcACAACCUGAGCCCUCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home