miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28332 3' -50 NC_005906.1 + 32492 0.66 0.964708
Target:  5'- --gUGUUGGACUCggGAGUCcaacaaacguGACAAAa -3'
miRNA:   3'- caaACAACCUGAGggCUCAG----------CUGUUU- -5'
28332 3' -50 NC_005906.1 + 67704 0.73 0.726919
Target:  5'- cGUUUGUUGGACUCggGAGUCcaacauauuuGACAAAu -3'
miRNA:   3'- -CAAACAACCUGAGggCUCAG----------CUGUUU- -5'
28332 3' -50 NC_005906.1 + 67613 0.78 0.434043
Target:  5'- cGUUUGUUGGACUCCaGAGUacaacacauuUGACAAAu -3'
miRNA:   3'- -CAAACAACCUGAGGgCUCA----------GCUGUUU- -5'
28332 3' -50 NC_005906.1 + 32597 0.8 0.359744
Target:  5'- cGUUUGUUGGACUCgaGAGUCGaACAc- -3'
miRNA:   3'- -CAAACAACCUGAGggCUCAGC-UGUuu -5'
28332 3' -50 NC_005906.1 + 67597 0.85 0.187677
Target:  5'- --aUGUUGGACUCCCGAGUCcaACAAAc -3'
miRNA:   3'- caaACAACCUGAGGGCUCAGc-UGUUU- -5'
28332 3' -50 NC_005906.1 + 32511 0.87 0.138058
Target:  5'- cGUUUGUUGGACnCCCGAGUcCGACAc- -3'
miRNA:   3'- -CAAACAACCUGaGGGCUCA-GCUGUuu -5'
28332 3' -50 NC_005906.1 + 11392 0.88 0.123211
Target:  5'- cGUUUGUcGGACUCCCGAGUcCGACAc- -3'
miRNA:   3'- -CAAACAaCCUGAGGGCUCA-GCUGUuu -5'
28332 3' -50 NC_005906.1 + 1004 0.92 0.064968
Target:  5'- cGUUUGUUGGACUCCCGAGUCcaacacauuuGACAAAc -3'
miRNA:   3'- -CAAACAACCUGAGGGCUCAG----------CUGUUU- -5'
28332 3' -50 NC_005906.1 + 32433 0.92 0.064968
Target:  5'- cGUUUGUUGGACUCCCGAGUCcaacacauuuGACAAAc -3'
miRNA:   3'- -CAAACAACCUGAGGGCUCAG----------CUGUUU- -5'
28332 3' -50 NC_005906.1 + 32385 0.93 0.059455
Target:  5'- cGUUUGUUGGACUCCCGAGuccaacacauUCGACAAAu -3'
miRNA:   3'- -CAAACAACCUGAGGGCUC----------AGCUGUUU- -5'
28332 3' -50 NC_005906.1 + 1082 0.96 0.036911
Target:  5'- cGUUUGUUGGACUCCCGAGUcCGACAc- -3'
miRNA:   3'- -CAAACAACCUGAGGGCUCA-GCUGUuu -5'
28332 3' -50 NC_005906.1 + 1172 0.96 0.036911
Target:  5'- cGUUUGUUGGACUCCCGAGUcCGACAc- -3'
miRNA:   3'- -CAAACAACCUGAGGGCUCA-GCUGUuu -5'
28332 3' -50 NC_005906.1 + 967 1.07 0.006991
Target:  5'- cGUUUGUUGGACUCCCGAGUCGACAAAu -3'
miRNA:   3'- -CAAACAACCUGAGGGCUCAGCUGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.