miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28332 5' -50.6 NC_005906.1 + 67794 0.66 0.967351
Target:  5'- aCGUUUGUUGG-CUCnCnAGUnCAACAc -3'
miRNA:   3'- -GCAAACAACCuGAGgGcUCAgGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 11285 0.71 0.820497
Target:  5'- ---gUGUcGGACUCggGAGUCCGACAa -3'
miRNA:   3'- gcaaACAaCCUGAGggCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 1189 0.71 0.79193
Target:  5'- ---gUGUcGGACUCggGAGUCCAACAa -3'
miRNA:   3'- gcaaACAaCCUGAGggCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 1291 0.71 0.79193
Target:  5'- aGUUUGUcaaaugugucGGACUCggGAGUCCAACAa -3'
miRNA:   3'- gCAAACAa---------CCUGAGggCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 67506 0.74 0.665684
Target:  5'- ---gUGUUGuACUCUgGAGUCCAACAa -3'
miRNA:   3'- gcaaACAACcUGAGGgCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 32540 0.79 0.368362
Target:  5'- ---gUGUUGGACUCggGAGUCCAACAa -3'
miRNA:   3'- gcaaACAACCUGAGggCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 1111 0.79 0.368362
Target:  5'- ---gUGUUGGACUCggGAGUCCAACAa -3'
miRNA:   3'- gcaaACAACCUGAGggCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 32492 0.79 0.368362
Target:  5'- ---gUGUUGGACUCggGAGUCCAACAa -3'
miRNA:   3'- gcaaACAACCUGAGggCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 32704 0.8 0.34291
Target:  5'- ---gUGUUcGACUCUCGAGUCCAACAa -3'
miRNA:   3'- gcaaACAAcCUGAGGGCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 67614 0.84 0.211499
Target:  5'- gCGUUUGUUGGACUCCaGAGUaCAACAc -3'
miRNA:   3'- -GCAAACAACCUGAGGgCUCAgGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 32596 0.84 0.190045
Target:  5'- gCGUUUGUUGGACUCgaGAGUCgAACAc -3'
miRNA:   3'- -GCAAACAACCUGAGggCUCAGgUUGU- -5'
28332 5' -50.6 NC_005906.1 + 67705 0.9 0.087048
Target:  5'- gCGUUUGUUGGACUCggGAGUCCAACAu -3'
miRNA:   3'- -GCAAACAACCUGAGggCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 966 0.96 0.037469
Target:  5'- aCGUUUGUUGGACUCCCGAGU-CGACAa -3'
miRNA:   3'- -GCAAACAACCUGAGGGCUCAgGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 67597 0.99 0.023365
Target:  5'- ---aUGUUGGACUCCCGAGUCCAACAa -3'
miRNA:   3'- gcaaACAACCUGAGGGCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 32510 1 0.020753
Target:  5'- gCGUUUGUUGGACnCCCGAGUCCGACAc -3'
miRNA:   3'- -GCAAACAACCUGaGGGCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 11393 1 0.01843
Target:  5'- gCGUUUGUcGGACUCCCGAGUCCGACAc -3'
miRNA:   3'- -GCAAACAaCCUGAGGGCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 1171 1.09 0.005429
Target:  5'- gCGUUUGUUGGACUCCCGAGUCCGACAc -3'
miRNA:   3'- -GCAAACAACCUGAGGGCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 1081 1.09 0.005429
Target:  5'- gCGUUUGUUGGACUCCCGAGUCCGACAc -3'
miRNA:   3'- -GCAAACAACCUGAGGGCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 32432 1.09 0.004964
Target:  5'- gCGUUUGUUGGACUCCCGAGUCCAACAc -3'
miRNA:   3'- -GCAAACAACCUGAGGGCUCAGGUUGU- -5'
28332 5' -50.6 NC_005906.1 + 1003 1.09 0.004964
Target:  5'- gCGUUUGUUGGACUCCCGAGUCCAACAc -3'
miRNA:   3'- -GCAAACAACCUGAGGGCUCAGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.