miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28333 3' -51.5 NC_005906.1 + 32614 0.67 0.916948
Target:  5'- cGGACUCggGnGUCCAACAaacgCGACa -3'
miRNA:   3'- -CCUGAGggCuCAGGUUGUguaaGCUG- -5'
28333 3' -51.5 NC_005906.1 + 11289 0.68 0.882992
Target:  5'- cGGACUCggGAGUCCGACAaacgCGAn -3'
miRNA:   3'- -CCUGAGggCUCAGGUUGUguaaGCUg -5'
28333 3' -51.5 NC_005906.1 + 1068 0.68 0.882246
Target:  5'- cGACUCggGAGUCCAACaaacgugACAUcUCGACu -3'
miRNA:   3'- cCUGAGggCUCAGGUUG-------UGUA-AGCUG- -5'
28333 3' -51.5 NC_005906.1 + 67786 0.7 0.825086
Target:  5'- uGGCUCnCnAGUnCAACACAUUUGACa -3'
miRNA:   3'- cCUGAGgGcUCAgGUUGUGUAAGCUG- -5'
28333 3' -51.5 NC_005906.1 + 32488 0.72 0.69453
Target:  5'- uGGACUCggGAGUCCAACAaacgUGACa -3'
miRNA:   3'- -CCUGAGggCUCAGGUUGUguaaGCUG- -5'
28333 3' -51.5 NC_005906.1 + 67512 0.73 0.672948
Target:  5'- -uACUCUgGAGUCCAACAaacgCGACa -3'
miRNA:   3'- ccUGAGGgCUCAGGUUGUguaaGCUG- -5'
28333 3' -51.5 NC_005906.1 + 32536 0.76 0.511519
Target:  5'- uGGACUCggGAGUCCAACAaacgCGACa -3'
miRNA:   3'- -CCUGAGggCUCAGGUUGUguaaGCUG- -5'
28333 3' -51.5 NC_005906.1 + 1107 0.76 0.511519
Target:  5'- uGGACUCggGAGUCCAACAaacgCGACa -3'
miRNA:   3'- -CCUGAGggCUCAGGUUGUguaaGCUG- -5'
28333 3' -51.5 NC_005906.1 + 1275 0.76 0.480813
Target:  5'- cGGACUCggGAGUCCAACAaacgCGACa -3'
miRNA:   3'- -CCUGAGggCUCAGGUUGUguaaGCUG- -5'
28333 3' -51.5 NC_005906.1 + 1185 0.76 0.480813
Target:  5'- cGGACUCggGAGUCCAACAaacgCGACa -3'
miRNA:   3'- -CCUGAGggCUCAGGUUGUguaaGCUG- -5'
28333 3' -51.5 NC_005906.1 + 974 0.76 0.480813
Target:  5'- uGGACUCCCGAGUC-GACAaa-UCGAg -3'
miRNA:   3'- -CCUGAGGGCUCAGgUUGUguaAGCUg -5'
28333 3' -51.5 NC_005906.1 + 67606 0.84 0.181485
Target:  5'- uGGACUCCaGAGUaCAACACAUUUGACa -3'
miRNA:   3'- -CCUGAGGgCUCAgGUUGUGUAAGCUG- -5'
28333 3' -51.5 NC_005906.1 + 32699 0.85 0.167418
Target:  5'- cGACUCUCGAGUCCAACAaacgCGACa -3'
miRNA:   3'- cCUGAGGGCUCAGGUUGUguaaGCUG- -5'
28333 3' -51.5 NC_005906.1 + 32604 0.85 0.16295
Target:  5'- uGGACUCgaGAGUCgAACACAUUUGACa -3'
miRNA:   3'- -CCUGAGggCUCAGgUUGUGUAAGCUG- -5'
28333 3' -51.5 NC_005906.1 + 67697 0.86 0.130918
Target:  5'- uGGACUCggGAGUCCAACAUAUUUGACa -3'
miRNA:   3'- -CCUGAGggCUCAGGUUGUGUAAGCUG- -5'
28333 3' -51.5 NC_005906.1 + 67601 0.95 0.038463
Target:  5'- uGGACUCCCGAGUCCAACAaacgCGACa -3'
miRNA:   3'- -CCUGAGGGCUCAGGUUGUguaaGCUG- -5'
28333 3' -51.5 NC_005906.1 + 32518 1 0.017983
Target:  5'- uGGACnCCCGAGUCCGACACAUUUGACa -3'
miRNA:   3'- -CCUGaGGGCUCAGGUUGUGUAAGCUG- -5'
28333 3' -51.5 NC_005906.1 + 1179 1.08 0.004769
Target:  5'- uGGACUCCCGAGUCCGACACAUUUGACa -3'
miRNA:   3'- -CCUGAGGGCUCAGGUUGUGUAAGCUG- -5'
28333 3' -51.5 NC_005906.1 + 1089 1.08 0.004769
Target:  5'- uGGACUCCCGAGUCCGACACAUUUGACa -3'
miRNA:   3'- -CCUGAGGGCUCAGGUUGUGUAAGCUG- -5'
28333 3' -51.5 NC_005906.1 + 11385 1.09 0.004364
Target:  5'- cGGACUCCCGAGUCCGACACAUUUGACa -3'
miRNA:   3'- -CCUGAGGGCUCAGGUUGUGUAAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.