miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28333 5' -52.9 NC_005906.1 + 67588 0.75 0.436039
Target:  5'- uUGUCaaauaUGUUGGACUCCCGAGUc -3'
miRNA:   3'- uACAGcgcaaACAACCUGAGGGCUCA- -5'
28333 5' -52.9 NC_005906.1 + 67711 0.86 0.086238
Target:  5'- aAUGUCGCGUUUGUUGGACUCggGAGUc -3'
miRNA:   3'- -UACAGCGCAAACAACCUGAGggCUCA- -5'
28333 5' -52.9 NC_005906.1 + 11399 0.89 0.057678
Target:  5'- aAUnUCGCGUUUGUcGGACUCCCGAGUc -3'
miRNA:   3'- -UAcAGCGCAAACAaCCUGAGGGCUCA- -5'
28333 5' -52.9 NC_005906.1 + 32590 0.9 0.048463
Target:  5'- aGUGUCGCGUUUGUUGGACUCgaGAGUc -3'
miRNA:   3'- -UACAGCGCAAACAACCUGAGggCUCA- -5'
28333 5' -52.9 NC_005906.1 + 32379 0.92 0.036197
Target:  5'- uUGUCaCGUUUGUUGGACUCCCGAGUc -3'
miRNA:   3'- uACAGcGCAAACAACCUGAGGGCUCA- -5'
28333 5' -52.9 NC_005906.1 + 960 0.93 0.02948
Target:  5'- gAUGUCaCGUUUGUUGGACUCCCGAGUc -3'
miRNA:   3'- -UACAGcGCAAACAACCUGAGGGCUCA- -5'
28333 5' -52.9 NC_005906.1 + 67620 0.95 0.021964
Target:  5'- gGUGUCGCGUUUGUUGGACUCCaGAGUa -3'
miRNA:   3'- -UACAGCGCAAACAACCUGAGGgCUCA- -5'
28333 5' -52.9 NC_005906.1 + 32504 0.97 0.017864
Target:  5'- gAUGUCGCGUUUGUUGGACnCCCGAGUc -3'
miRNA:   3'- -UACAGCGCAAACAACCUGaGGGCUCA- -5'
28333 5' -52.9 NC_005906.1 + 1075 1.05 0.0047
Target:  5'- gAUGUCGCGUUUGUUGGACUCCCGAGUc -3'
miRNA:   3'- -UACAGCGCAAACAACCUGAGGGCUCA- -5'
28333 5' -52.9 NC_005906.1 + 1165 1.05 0.0047
Target:  5'- gAUGUCGCGUUUGUUGGACUCCCGAGUc -3'
miRNA:   3'- -UACAGCGCAAACAACCUGAGGGCUCA- -5'
28333 5' -52.9 NC_005906.1 + 32426 1.05 0.0047
Target:  5'- gAUGUCGCGUUUGUUGGACUCCCGAGUc -3'
miRNA:   3'- -UACAGCGCAAACAACCUGAGGGCUCA- -5'
28333 5' -52.9 NC_005906.1 + 997 1.06 0.004429
Target:  5'- aGUGUCGCGUUUGUUGGACUCCCGAGUc -3'
miRNA:   3'- -UACAGCGCAAACAACCUGAGGGCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.