Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28334 | 3' | -62.9 | NC_005946.1 | + | 11280 | 0.66 | 0.56518 |
Target: 5'- cCCGGCuCccgucaggaugucuaGGGACuccucgaagGCCGCCCUgcucaGGGgUCCg -3' miRNA: 3'- -GGCUG-G---------------UCCUG---------CGGCGGGA-----CCCgAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 75034 | 0.69 | 0.364003 |
Target: 5'- aCGACCGGGugaGCgGCCGCCaggucguaacccgcGGCUCCa -3' miRNA: 3'- gGCUGGUCC---UG-CGGCGGgac-----------CCGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 2886 | 0.69 | 0.366328 |
Target: 5'- gCCGACCuguccucgcAGGACGCCGgC-UGGGC-Ca -3' miRNA: 3'- -GGCUGG---------UCCUGCGGCgGgACCCGaGg -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 97009 | 0.69 | 0.371793 |
Target: 5'- gCUGAgCAGGGCGuuGCUgcugCUGGGCagggcgucucugagUCCa -3' miRNA: 3'- -GGCUgGUCCUGCggCGG----GACCCG--------------AGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 40104 | 0.69 | 0.382088 |
Target: 5'- cCUGACgGGGACccuGCCGUacucUUUGGGCUCg -3' miRNA: 3'- -GGCUGgUCCUG---CGGCG----GGACCCGAGg -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 97051 | 0.69 | 0.390136 |
Target: 5'- gCUGAgCAGGGCGuuGCUgcugCUGGGCa-- -3' miRNA: 3'- -GGCUgGUCCUGCggCGG----GACCCGagg -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 73259 | 0.69 | 0.393386 |
Target: 5'- cCUGGCCAacaagaggguGGACGCCaccgggccccucaucGCCUUccuccuggacGGGCUCCu -3' miRNA: 3'- -GGCUGGU----------CCUGCGG---------------CGGGA----------CCCGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 59653 | 0.68 | 0.398294 |
Target: 5'- aCgGGCCugGGGACGuaGCCCaGGGCcaCCg -3' miRNA: 3'- -GgCUGG--UCCUGCggCGGGaCCCGa-GG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 22192 | 0.68 | 0.414933 |
Target: 5'- gCGGCUAcccucGGGCugGCUGCCCUGGccgcggccGCUCCc -3' miRNA: 3'- gGCUGGU-----CCUG--CGGCGGGACC--------CGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 20735 | 0.69 | 0.358617 |
Target: 5'- aCGACCuGGACGCCGUggucaccagCCUGGcCggCCu -3' miRNA: 3'- gGCUGGuCCUGCGGCG---------GGACCcGa-GG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 95391 | 0.69 | 0.351021 |
Target: 5'- aCCGGCCaagaccgucaggGGGAcCGUCagGCCCagGGGCUUCg -3' miRNA: 3'- -GGCUGG------------UCCU-GCGG--CGGGa-CCCGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 67509 | 0.7 | 0.336174 |
Target: 5'- uUGACCAGGACGUCugagGCCUUucGGGCgucgaaCCa -3' miRNA: 3'- gGCUGGUCCUGCGG----CGGGA--CCCGa-----GG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 61475 | 0.86 | 0.028256 |
Target: 5'- cCCGAgaGGGACGCCGCCCUGGccgacaggauGCUCCu -3' miRNA: 3'- -GGCUggUCCUGCGGCGGGACC----------CGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 59990 | 0.76 | 0.142095 |
Target: 5'- gCCGGCCAcGGggcccgcguaaccguACGCgGCCCUGGGuCUCg -3' miRNA: 3'- -GGCUGGU-CC---------------UGCGgCGGGACCC-GAGg -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 79449 | 0.75 | 0.155345 |
Target: 5'- -gGGCCGGGugGaCGCuCCUGGGCUggaCCa -3' miRNA: 3'- ggCUGGUCCugCgGCG-GGACCCGA---GG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 26353 | 0.75 | 0.155345 |
Target: 5'- uUGACCAGGACGUCGgguacGGGCUCCu -3' miRNA: 3'- gGCUGGUCCUGCGGCggga-CCCGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 56345 | 0.75 | 0.167231 |
Target: 5'- gCCGccaGCCuggAGGACGCUGCCCUGGuccucGCgUCCa -3' miRNA: 3'- -GGC---UGG---UCCUGCGGCGGGACC-----CG-AGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 94452 | 0.71 | 0.268895 |
Target: 5'- aCCGGcCCAGaGuaccuCGCCGCCCUggugaGGGC-CCu -3' miRNA: 3'- -GGCU-GGUC-Cu----GCGGCGGGA-----CCCGaGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 67891 | 0.71 | 0.281427 |
Target: 5'- cUCGGCCAGGACcuCCGCCUcgGGGUagUCa -3' miRNA: 3'- -GGCUGGUCCUGc-GGCGGGa-CCCG--AGg -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 14552 | 0.7 | 0.328924 |
Target: 5'- gCCGuCCAGGACGaccCCGCCUUuGGCcaCCa -3' miRNA: 3'- -GGCuGGUCCUGC---GGCGGGAcCCGa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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