miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28334 3' -62.9 NC_005946.1 + 14397 0.68 0.422559
Target:  5'- uCUGACCAGaGGCuGCauaGUCCUGGccaggggagcggcGCUCCu -3'
miRNA:   3'- -GGCUGGUC-CUG-CGg--CGGGACC-------------CGAGG- -5'
28334 3' -62.9 NC_005946.1 + 22192 0.68 0.414933
Target:  5'- gCGGCUAcccucGGGCugGCUGCCCUGGccgcggccGCUCCc -3'
miRNA:   3'- gGCUGGU-----CCUG--CGGCGGGACC--------CGAGG- -5'
28334 3' -62.9 NC_005946.1 + 59653 0.68 0.398294
Target:  5'- aCgGGCCugGGGACGuaGCCCaGGGCcaCCg -3'
miRNA:   3'- -GgCUGG--UCCUGCggCGGGaCCCGa-GG- -5'
28334 3' -62.9 NC_005946.1 + 73259 0.69 0.393386
Target:  5'- cCUGGCCAacaagaggguGGACGCCaccgggccccucaucGCCUUccuccuggacGGGCUCCu -3'
miRNA:   3'- -GGCUGGU----------CCUGCGG---------------CGGGA----------CCCGAGG- -5'
28334 3' -62.9 NC_005946.1 + 97051 0.69 0.390136
Target:  5'- gCUGAgCAGGGCGuuGCUgcugCUGGGCa-- -3'
miRNA:   3'- -GGCUgGUCCUGCggCGG----GACCCGagg -5'
28334 3' -62.9 NC_005946.1 + 40104 0.69 0.382088
Target:  5'- cCUGACgGGGACccuGCCGUacucUUUGGGCUCg -3'
miRNA:   3'- -GGCUGgUCCUG---CGGCG----GGACCCGAGg -5'
28334 3' -62.9 NC_005946.1 + 97009 0.69 0.371793
Target:  5'- gCUGAgCAGGGCGuuGCUgcugCUGGGCagggcgucucugagUCCa -3'
miRNA:   3'- -GGCUgGUCCUGCggCGG----GACCCG--------------AGG- -5'
28334 3' -62.9 NC_005946.1 + 2886 0.69 0.366328
Target:  5'- gCCGACCuguccucgcAGGACGCCGgC-UGGGC-Ca -3'
miRNA:   3'- -GGCUGG---------UCCUGCGGCgGgACCCGaGg -5'
28334 3' -62.9 NC_005946.1 + 75034 0.69 0.364003
Target:  5'- aCGACCGGGugaGCgGCCGCCaggucguaacccgcGGCUCCa -3'
miRNA:   3'- gGCUGGUCC---UG-CGGCGGgac-----------CCGAGG- -5'
28334 3' -62.9 NC_005946.1 + 20735 0.69 0.358617
Target:  5'- aCGACCuGGACGCCGUggucaccagCCUGGcCggCCu -3'
miRNA:   3'- gGCUGGuCCUGCGGCG---------GGACCcGa-GG- -5'
28334 3' -62.9 NC_005946.1 + 95391 0.69 0.351021
Target:  5'- aCCGGCCaagaccgucaggGGGAcCGUCagGCCCagGGGCUUCg -3'
miRNA:   3'- -GGCUGG------------UCCU-GCGG--CGGGa-CCCGAGG- -5'
28334 3' -62.9 NC_005946.1 + 67509 0.7 0.336174
Target:  5'- uUGACCAGGACGUCugagGCCUUucGGGCgucgaaCCa -3'
miRNA:   3'- gGCUGGUCCUGCGG----CGGGA--CCCGa-----GG- -5'
28334 3' -62.9 NC_005946.1 + 14552 0.7 0.328924
Target:  5'- gCCGuCCAGGACGaccCCGCCUUuGGCcaCCa -3'
miRNA:   3'- -GGCuGGUCCUGC---GGCGGGAcCCGa-GG- -5'
28334 3' -62.9 NC_005946.1 + 67891 0.71 0.281427
Target:  5'- cUCGGCCAGGACcuCCGCCUcgGGGUagUCa -3'
miRNA:   3'- -GGCUGGUCCUGc-GGCGGGa-CCCG--AGg -5'
28334 3' -62.9 NC_005946.1 + 94452 0.71 0.268895
Target:  5'- aCCGGcCCAGaGuaccuCGCCGCCCUggugaGGGC-CCu -3'
miRNA:   3'- -GGCU-GGUC-Cu----GCGGCGGGA-----CCCGaGG- -5'
28334 3' -62.9 NC_005946.1 + 56345 0.75 0.167231
Target:  5'- gCCGccaGCCuggAGGACGCUGCCCUGGuccucGCgUCCa -3'
miRNA:   3'- -GGC---UGG---UCCUGCGGCGGGACC-----CG-AGG- -5'
28334 3' -62.9 NC_005946.1 + 79449 0.75 0.155345
Target:  5'- -gGGCCGGGugGaCGCuCCUGGGCUggaCCa -3'
miRNA:   3'- ggCUGGUCCugCgGCG-GGACCCGA---GG- -5'
28334 3' -62.9 NC_005946.1 + 26353 0.75 0.155345
Target:  5'- uUGACCAGGACGUCGgguacGGGCUCCu -3'
miRNA:   3'- gGCUGGUCCUGCGGCggga-CCCGAGG- -5'
28334 3' -62.9 NC_005946.1 + 59990 0.76 0.142095
Target:  5'- gCCGGCCAcGGggcccgcguaaccguACGCgGCCCUGGGuCUCg -3'
miRNA:   3'- -GGCUGGU-CC---------------UGCGgCGGGACCC-GAGg -5'
28334 3' -62.9 NC_005946.1 + 61475 0.86 0.028256
Target:  5'- cCCGAgaGGGACGCCGCCCUGGccgacaggauGCUCCu -3'
miRNA:   3'- -GGCUggUCCUGCGGCGGGACC----------CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.