Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28334 | 5' | -57.8 | NC_005946.1 | + | 64835 | 0.66 | 0.755992 |
Target: 5'- cCGAGAuCCCCGcGAGCGcCAG-UUGCu -3' miRNA: 3'- -GUUCUuGGGGC-CUCGCcGUCuGACGu -5' |
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28334 | 5' | -57.8 | NC_005946.1 | + | 74030 | 0.66 | 0.716105 |
Target: 5'- --cGGACCCCaaGGGGCuGgAGACUGUu -3' miRNA: 3'- guuCUUGGGG--CCUCGcCgUCUGACGu -5' |
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28334 | 5' | -57.8 | NC_005946.1 | + | 76725 | 0.67 | 0.664638 |
Target: 5'- aAGGGGCCCCGcGGGC-GCAGGCg--- -3' miRNA: 3'- gUUCUUGGGGC-CUCGcCGUCUGacgu -5' |
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28334 | 5' | -57.8 | NC_005946.1 | + | 92080 | 0.67 | 0.654225 |
Target: 5'- --cGGAUCCCuGAGCcacGCAGACUGUg -3' miRNA: 3'- guuCUUGGGGcCUCGc--CGUCUGACGu -5' |
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28334 | 5' | -57.8 | NC_005946.1 | + | 95092 | 0.67 | 0.654225 |
Target: 5'- cCAGGGACaacaCCcaGGCGGCAGAC-GCAa -3' miRNA: 3'- -GUUCUUGg---GGccUCGCCGUCUGaCGU- -5' |
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28334 | 5' | -57.8 | NC_005946.1 | + | 73533 | 0.68 | 0.633354 |
Target: 5'- cCGAGGACCCCGuGGCGGaucuGGCcaaGCAc -3' miRNA: 3'- -GUUCUUGGGGCcUCGCCgu--CUGa--CGU- -5' |
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28334 | 5' | -57.8 | NC_005946.1 | + | 79245 | 0.68 | 0.591663 |
Target: 5'- aGAGGACCCuCGcGGCGGCcu-CUGCGa -3' miRNA: 3'- gUUCUUGGG-GCcUCGCCGucuGACGU- -5' |
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28334 | 5' | -57.8 | NC_005946.1 | + | 62004 | 0.7 | 0.51914 |
Target: 5'- gCAAGAccuucauGCCCUGGAGCuguggaggaGGCugGGGCUGCc -3' miRNA: 3'- -GUUCU-------UGGGGCCUCG---------CCG--UCUGACGu -5' |
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28334 | 5' | -57.8 | NC_005946.1 | + | 76391 | 0.7 | 0.504237 |
Target: 5'- aGAGGcCCCCGGAGCGGUGGguccaaccggucccaGCgggGCGc -3' miRNA: 3'- gUUCUuGGGGCCUCGCCGUC---------------UGa--CGU- -5' |
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28334 | 5' | -57.8 | NC_005946.1 | + | 2993 | 0.71 | 0.461665 |
Target: 5'- cCAGGAuguuCCCCgucaaGGAGUuuGCAGACUGCAc -3' miRNA: 3'- -GUUCUu---GGGG-----CCUCGc-CGUCUGACGU- -5' |
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28334 | 5' | -57.8 | NC_005946.1 | + | 56148 | 0.74 | 0.310315 |
Target: 5'- -uGGGGCCUCGGGGaUGGC-GACUGCGg -3' miRNA: 3'- guUCUUGGGGCCUC-GCCGuCUGACGU- -5' |
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28334 | 5' | -57.8 | NC_005946.1 | + | 2200 | 1.08 | 0.001384 |
Target: 5'- uCAAGAACCCCGGAGCGGCAGACUGCAa -3' miRNA: 3'- -GUUCUUGGGGCCUCGCCGUCUGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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