miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28334 5' -57.8 NC_005946.1 + 64835 0.66 0.755992
Target:  5'- cCGAGAuCCCCGcGAGCGcCAG-UUGCu -3'
miRNA:   3'- -GUUCUuGGGGC-CUCGCcGUCuGACGu -5'
28334 5' -57.8 NC_005946.1 + 74030 0.66 0.716105
Target:  5'- --cGGACCCCaaGGGGCuGgAGACUGUu -3'
miRNA:   3'- guuCUUGGGG--CCUCGcCgUCUGACGu -5'
28334 5' -57.8 NC_005946.1 + 76725 0.67 0.664638
Target:  5'- aAGGGGCCCCGcGGGC-GCAGGCg--- -3'
miRNA:   3'- gUUCUUGGGGC-CUCGcCGUCUGacgu -5'
28334 5' -57.8 NC_005946.1 + 95092 0.67 0.654225
Target:  5'- cCAGGGACaacaCCcaGGCGGCAGAC-GCAa -3'
miRNA:   3'- -GUUCUUGg---GGccUCGCCGUCUGaCGU- -5'
28334 5' -57.8 NC_005946.1 + 92080 0.67 0.654225
Target:  5'- --cGGAUCCCuGAGCcacGCAGACUGUg -3'
miRNA:   3'- guuCUUGGGGcCUCGc--CGUCUGACGu -5'
28334 5' -57.8 NC_005946.1 + 73533 0.68 0.633354
Target:  5'- cCGAGGACCCCGuGGCGGaucuGGCcaaGCAc -3'
miRNA:   3'- -GUUCUUGGGGCcUCGCCgu--CUGa--CGU- -5'
28334 5' -57.8 NC_005946.1 + 79245 0.68 0.591663
Target:  5'- aGAGGACCCuCGcGGCGGCcu-CUGCGa -3'
miRNA:   3'- gUUCUUGGG-GCcUCGCCGucuGACGU- -5'
28334 5' -57.8 NC_005946.1 + 62004 0.7 0.51914
Target:  5'- gCAAGAccuucauGCCCUGGAGCuguggaggaGGCugGGGCUGCc -3'
miRNA:   3'- -GUUCU-------UGGGGCCUCG---------CCG--UCUGACGu -5'
28334 5' -57.8 NC_005946.1 + 76391 0.7 0.504237
Target:  5'- aGAGGcCCCCGGAGCGGUGGguccaaccggucccaGCgggGCGc -3'
miRNA:   3'- gUUCUuGGGGCCUCGCCGUC---------------UGa--CGU- -5'
28334 5' -57.8 NC_005946.1 + 2993 0.71 0.461665
Target:  5'- cCAGGAuguuCCCCgucaaGGAGUuuGCAGACUGCAc -3'
miRNA:   3'- -GUUCUu---GGGG-----CCUCGc-CGUCUGACGU- -5'
28334 5' -57.8 NC_005946.1 + 56148 0.74 0.310315
Target:  5'- -uGGGGCCUCGGGGaUGGC-GACUGCGg -3'
miRNA:   3'- guUCUUGGGGCCUC-GCCGuCUGACGU- -5'
28334 5' -57.8 NC_005946.1 + 2200 1.08 0.001384
Target:  5'- uCAAGAACCCCGGAGCGGCAGACUGCAa -3'
miRNA:   3'- -GUUCUUGGGGCCUCGCCGUCUGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.