Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28335 | 5' | -45.6 | NC_005946.1 | + | 99517 | 0.66 | 0.999945 |
Target: 5'- cCCUGCAaGGAuccuGAGAUCUcAG-GUGCa -3' miRNA: 3'- -GGGCGUaUUUu---UUCUGGGuUCaCACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 12886 | 0.66 | 0.999935 |
Target: 5'- gCCGCGgaggccguGGCUCAGGUGagGCu -3' miRNA: 3'- gGGCGUauuuuuu-CUGGGUUCACa-CG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 60877 | 0.66 | 0.999929 |
Target: 5'- cCCCGCGacucuucguGuCCCAAGUcUGCa -3' miRNA: 3'- -GGGCGUauuuuuu--CuGGGUUCAcACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 41477 | 0.66 | 0.999927 |
Target: 5'- aCCCGCGUcacccuuGGGACCCuGGaGcGCa -3' miRNA: 3'- -GGGCGUAuuuu---UUCUGGGuUCaCaCG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 95453 | 0.66 | 0.999927 |
Target: 5'- gCCGCAgguGGGAGACCCGccgcagGCu -3' miRNA: 3'- gGGCGUauuUUUUCUGGGUucaca-CG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 37418 | 0.66 | 0.999927 |
Target: 5'- uCCCGUcuuUGGGAAAGACagaCAcAGaGUGCa -3' miRNA: 3'- -GGGCGu--AUUUUUUCUGg--GU-UCaCACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 61256 | 0.66 | 0.999927 |
Target: 5'- gCCUGCG---AGAGGACCgGccUGUGCc -3' miRNA: 3'- -GGGCGUauuUUUUCUGGgUucACACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 2612 | 0.66 | 0.999871 |
Target: 5'- aCCUGCGgcaagGAcuGGGACCUggGggagcagacGUGCg -3' miRNA: 3'- -GGGCGUa----UUuuUUCUGGGuuCa--------CACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 84146 | 0.66 | 0.999871 |
Target: 5'- cCCCGUgaaaAUGuccAAAAAGACCCugucGGUG-GUg -3' miRNA: 3'- -GGGCG----UAU---UUUUUCUGGGu---UCACaCG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 12164 | 0.66 | 0.999871 |
Target: 5'- -gUGCGUGGAcugggaucaGAGGACCCug--GUGCa -3' miRNA: 3'- ggGCGUAUUU---------UUUCUGGGuucaCACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 82411 | 0.66 | 0.999817 |
Target: 5'- --gGCAgGAGAAacguccuucccuucAGGCCCGAGacUGUGCa -3' miRNA: 3'- gggCGUaUUUUU--------------UCUGGGUUC--ACACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 79256 | 0.67 | 0.999781 |
Target: 5'- gCCGUAcuUGGAGAGGACCCucGcG-GCg -3' miRNA: 3'- gGGCGU--AUUUUUUCUGGGuuCaCaCG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 8713 | 0.67 | 0.999775 |
Target: 5'- cCCCGU---GAGAGGGCCUccacucgGAGggccUGUGCa -3' miRNA: 3'- -GGGCGuauUUUUUCUGGG-------UUC----ACACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 86254 | 0.67 | 0.999717 |
Target: 5'- uCCCGCAUcGAGGAacCCCAGGga-GCu -3' miRNA: 3'- -GGGCGUAuUUUUUcuGGGUUCacaCG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 2044 | 0.67 | 0.999611 |
Target: 5'- gCCGaCAaacuguccuACCCAAGUGUGCc -3' miRNA: 3'- gGGC-GUauuuuuuc-UGGGUUCACACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 24710 | 0.67 | 0.999541 |
Target: 5'- aUCCGguUuggggGGGuuGGGCCCGGGUGggGCc -3' miRNA: 3'- -GGGCguA-----UUUuuUCUGGGUUCACa-CG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 42966 | 0.68 | 0.999139 |
Target: 5'- aCCGCcuugcu-GGACCCcaucaugacagacagGGGUGUGCc -3' miRNA: 3'- gGGCGuauuuuuUCUGGG---------------UUCACACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 2865 | 0.68 | 0.99912 |
Target: 5'- gCCgGCugggccacuAGGCCCGAcgccGUGUGCg -3' miRNA: 3'- -GGgCGuauuuuu--UCUGGGUU----CACACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 10905 | 0.68 | 0.999101 |
Target: 5'- aCCUGCAccgAAAAGAGACCCGuaaagaGGU-UGUc -3' miRNA: 3'- -GGGCGUa--UUUUUUCUGGGU------UCAcACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 52318 | 0.68 | 0.999101 |
Target: 5'- cCCCGCcaccuucaaggGUaugGAGGGAGACCCg---GUGCa -3' miRNA: 3'- -GGGCG-----------UA---UUUUUUCUGGGuucaCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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