miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28335 5' -45.6 NC_005946.1 + 99517 0.66 0.999945
Target:  5'- cCCUGCAaGGAuccuGAGAUCUcAG-GUGCa -3'
miRNA:   3'- -GGGCGUaUUUu---UUCUGGGuUCaCACG- -5'
28335 5' -45.6 NC_005946.1 + 12886 0.66 0.999935
Target:  5'- gCCGCGgaggccguGGCUCAGGUGagGCu -3'
miRNA:   3'- gGGCGUauuuuuu-CUGGGUUCACa-CG- -5'
28335 5' -45.6 NC_005946.1 + 60877 0.66 0.999929
Target:  5'- cCCCGCGacucuucguGuCCCAAGUcUGCa -3'
miRNA:   3'- -GGGCGUauuuuuu--CuGGGUUCAcACG- -5'
28335 5' -45.6 NC_005946.1 + 61256 0.66 0.999927
Target:  5'- gCCUGCG---AGAGGACCgGccUGUGCc -3'
miRNA:   3'- -GGGCGUauuUUUUCUGGgUucACACG- -5'
28335 5' -45.6 NC_005946.1 + 95453 0.66 0.999927
Target:  5'- gCCGCAgguGGGAGACCCGccgcagGCu -3'
miRNA:   3'- gGGCGUauuUUUUCUGGGUucaca-CG- -5'
28335 5' -45.6 NC_005946.1 + 41477 0.66 0.999927
Target:  5'- aCCCGCGUcacccuuGGGACCCuGGaGcGCa -3'
miRNA:   3'- -GGGCGUAuuuu---UUCUGGGuUCaCaCG- -5'
28335 5' -45.6 NC_005946.1 + 37418 0.66 0.999927
Target:  5'- uCCCGUcuuUGGGAAAGACagaCAcAGaGUGCa -3'
miRNA:   3'- -GGGCGu--AUUUUUUCUGg--GU-UCaCACG- -5'
28335 5' -45.6 NC_005946.1 + 84146 0.66 0.999871
Target:  5'- cCCCGUgaaaAUGuccAAAAAGACCCugucGGUG-GUg -3'
miRNA:   3'- -GGGCG----UAU---UUUUUCUGGGu---UCACaCG- -5'
28335 5' -45.6 NC_005946.1 + 12164 0.66 0.999871
Target:  5'- -gUGCGUGGAcugggaucaGAGGACCCug--GUGCa -3'
miRNA:   3'- ggGCGUAUUU---------UUUCUGGGuucaCACG- -5'
28335 5' -45.6 NC_005946.1 + 2612 0.66 0.999871
Target:  5'- aCCUGCGgcaagGAcuGGGACCUggGggagcagacGUGCg -3'
miRNA:   3'- -GGGCGUa----UUuuUUCUGGGuuCa--------CACG- -5'
28335 5' -45.6 NC_005946.1 + 82411 0.66 0.999817
Target:  5'- --gGCAgGAGAAacguccuucccuucAGGCCCGAGacUGUGCa -3'
miRNA:   3'- gggCGUaUUUUU--------------UCUGGGUUC--ACACG- -5'
28335 5' -45.6 NC_005946.1 + 79256 0.67 0.999781
Target:  5'- gCCGUAcuUGGAGAGGACCCucGcG-GCg -3'
miRNA:   3'- gGGCGU--AUUUUUUCUGGGuuCaCaCG- -5'
28335 5' -45.6 NC_005946.1 + 8713 0.67 0.999775
Target:  5'- cCCCGU---GAGAGGGCCUccacucgGAGggccUGUGCa -3'
miRNA:   3'- -GGGCGuauUUUUUCUGGG-------UUC----ACACG- -5'
28335 5' -45.6 NC_005946.1 + 86254 0.67 0.999717
Target:  5'- uCCCGCAUcGAGGAacCCCAGGga-GCu -3'
miRNA:   3'- -GGGCGUAuUUUUUcuGGGUUCacaCG- -5'
28335 5' -45.6 NC_005946.1 + 2044 0.67 0.999611
Target:  5'- gCCGaCAaacuguccuACCCAAGUGUGCc -3'
miRNA:   3'- gGGC-GUauuuuuuc-UGGGUUCACACG- -5'
28335 5' -45.6 NC_005946.1 + 24710 0.67 0.999541
Target:  5'- aUCCGguUuggggGGGuuGGGCCCGGGUGggGCc -3'
miRNA:   3'- -GGGCguA-----UUUuuUCUGGGUUCACa-CG- -5'
28335 5' -45.6 NC_005946.1 + 42966 0.68 0.999139
Target:  5'- aCCGCcuugcu-GGACCCcaucaugacagacagGGGUGUGCc -3'
miRNA:   3'- gGGCGuauuuuuUCUGGG---------------UUCACACG- -5'
28335 5' -45.6 NC_005946.1 + 2865 0.68 0.99912
Target:  5'- gCCgGCugggccacuAGGCCCGAcgccGUGUGCg -3'
miRNA:   3'- -GGgCGuauuuuu--UCUGGGUU----CACACG- -5'
28335 5' -45.6 NC_005946.1 + 75108 0.68 0.999101
Target:  5'- cCCUGCcgu--AGAGGCCCGGGg--GCa -3'
miRNA:   3'- -GGGCGuauuuUUUCUGGGUUCacaCG- -5'
28335 5' -45.6 NC_005946.1 + 52318 0.68 0.999101
Target:  5'- cCCCGCcaccuucaaggGUaugGAGGGAGACCCg---GUGCa -3'
miRNA:   3'- -GGGCG-----------UA---UUUUUUCUGGGuucaCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.