Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28335 | 5' | -45.6 | NC_005946.1 | + | 99517 | 0.66 | 0.999945 |
Target: 5'- cCCUGCAaGGAuccuGAGAUCUcAG-GUGCa -3' miRNA: 3'- -GGGCGUaUUUu---UUCUGGGuUCaCACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 95489 | 0.7 | 0.993346 |
Target: 5'- gCCGCAgguGGGAGACCCGccgcaGGUGg-- -3' miRNA: 3'- gGGCGUauuUUUUCUGGGU-----UCACacg -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 95453 | 0.66 | 0.999927 |
Target: 5'- gCCGCAgguGGGAGACCCGccgcagGCu -3' miRNA: 3'- gGGCGUauuUUUUCUGGGUucaca-CG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 93874 | 0.68 | 0.99889 |
Target: 5'- gCCGCAgcggUAGAAGAG-CCCAGGggacagGCc -3' miRNA: 3'- gGGCGU----AUUUUUUCuGGGUUCaca---CG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 92297 | 0.75 | 0.916507 |
Target: 5'- cCCCGCAgccuccAGACCCcugagGAGUGUGg -3' miRNA: 3'- -GGGCGUauuuuuUCUGGG-----UUCACACg -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 86254 | 0.67 | 0.999717 |
Target: 5'- uCCCGCAUcGAGGAacCCCAGGga-GCu -3' miRNA: 3'- -GGGCGUAuUUUUUcuGGGUUCacaCG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 84146 | 0.66 | 0.999871 |
Target: 5'- cCCCGUgaaaAUGuccAAAAAGACCCugucGGUG-GUg -3' miRNA: 3'- -GGGCG----UAU---UUUUUCUGGGu---UCACaCG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 82514 | 0.69 | 0.997868 |
Target: 5'- gUCUGCGggaggcagGAGAAacguccuucccuucAGGCCCAAGacUGUGCa -3' miRNA: 3'- -GGGCGUa-------UUUUU--------------UCUGGGUUC--ACACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 82411 | 0.66 | 0.999817 |
Target: 5'- --gGCAgGAGAAacguccuucccuucAGGCCCGAGacUGUGCa -3' miRNA: 3'- gggCGUaUUUUU--------------UCUGGGUUC--ACACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 79256 | 0.67 | 0.999781 |
Target: 5'- gCCGUAcuUGGAGAGGACCCucGcG-GCg -3' miRNA: 3'- gGGCGU--AUUUUUUCUGGGuuCaCaCG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 78083 | 0.71 | 0.98968 |
Target: 5'- aCCGCAcacugUGAugccuuauGuCCCAGGUGUGCc -3' miRNA: 3'- gGGCGU-----AUUuuuu----CuGGGUUCACACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 75108 | 0.68 | 0.999101 |
Target: 5'- cCCUGCcgu--AGAGGCCCGGGg--GCa -3' miRNA: 3'- -GGGCGuauuuUUUCUGGGUUCacaCG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 71839 | 0.69 | 0.997828 |
Target: 5'- gCCCGCGggccagaggacggGAGGAGGuCCCGcgGGacUGUGCg -3' miRNA: 3'- -GGGCGUa------------UUUUUUCuGGGU--UC--ACACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 68741 | 0.7 | 0.993346 |
Target: 5'- uCCCaCGUGAAcgucucuGACCCAGGaGUGCc -3' miRNA: 3'- -GGGcGUAUUUuuu----CUGGGUUCaCACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 67589 | 0.71 | 0.986468 |
Target: 5'- aCCCGCAagUGGGAAGGuCCCugaggcuGGUGaGCu -3' miRNA: 3'- -GGGCGU--AUUUUUUCuGGGu------UCACaCG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 64159 | 0.7 | 0.993346 |
Target: 5'- uUCCGUGUGGAGGaugaccguGGACCCGAGcuUGgGCa -3' miRNA: 3'- -GGGCGUAUUUUU--------UCUGGGUUC--ACaCG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 61256 | 0.66 | 0.999927 |
Target: 5'- gCCUGCG---AGAGGACCgGccUGUGCc -3' miRNA: 3'- -GGGCGUauuUUUUCUGGgUucACACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 60877 | 0.66 | 0.999929 |
Target: 5'- cCCCGCGacucuucguGuCCCAAGUcUGCa -3' miRNA: 3'- -GGGCGUauuuuuu--CuGGGUUCAcACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 52318 | 0.68 | 0.999101 |
Target: 5'- cCCCGCcaccuucaaggGUaugGAGGGAGACCCg---GUGCa -3' miRNA: 3'- -GGGCG-----------UA---UUUUUUCUGGGuucaCACG- -5' |
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28335 | 5' | -45.6 | NC_005946.1 | + | 48277 | 0.68 | 0.99889 |
Target: 5'- gCCCGgGUAAG--GGugCUggGgGUGCu -3' miRNA: 3'- -GGGCgUAUUUuuUCugGGuuCaCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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