miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28335 5' -45.6 NC_005946.1 + 68741 0.7 0.993346
Target:  5'- uCCCaCGUGAAcgucucuGACCCAGGaGUGCc -3'
miRNA:   3'- -GGGcGUAUUUuuu----CUGGGUUCaCACG- -5'
28335 5' -45.6 NC_005946.1 + 71839 0.69 0.997828
Target:  5'- gCCCGCGggccagaggacggGAGGAGGuCCCGcgGGacUGUGCg -3'
miRNA:   3'- -GGGCGUa------------UUUUUUCuGGGU--UC--ACACG- -5'
28335 5' -45.6 NC_005946.1 + 75108 0.68 0.999101
Target:  5'- cCCUGCcgu--AGAGGCCCGGGg--GCa -3'
miRNA:   3'- -GGGCGuauuuUUUCUGGGUUCacaCG- -5'
28335 5' -45.6 NC_005946.1 + 78083 0.71 0.98968
Target:  5'- aCCGCAcacugUGAugccuuauGuCCCAGGUGUGCc -3'
miRNA:   3'- gGGCGU-----AUUuuuu----CuGGGUUCACACG- -5'
28335 5' -45.6 NC_005946.1 + 79256 0.67 0.999781
Target:  5'- gCCGUAcuUGGAGAGGACCCucGcG-GCg -3'
miRNA:   3'- gGGCGU--AUUUUUUCUGGGuuCaCaCG- -5'
28335 5' -45.6 NC_005946.1 + 82411 0.66 0.999817
Target:  5'- --gGCAgGAGAAacguccuucccuucAGGCCCGAGacUGUGCa -3'
miRNA:   3'- gggCGUaUUUUU--------------UCUGGGUUC--ACACG- -5'
28335 5' -45.6 NC_005946.1 + 82514 0.69 0.997868
Target:  5'- gUCUGCGggaggcagGAGAAacguccuucccuucAGGCCCAAGacUGUGCa -3'
miRNA:   3'- -GGGCGUa-------UUUUU--------------UCUGGGUUC--ACACG- -5'
28335 5' -45.6 NC_005946.1 + 84146 0.66 0.999871
Target:  5'- cCCCGUgaaaAUGuccAAAAAGACCCugucGGUG-GUg -3'
miRNA:   3'- -GGGCG----UAU---UUUUUCUGGGu---UCACaCG- -5'
28335 5' -45.6 NC_005946.1 + 86254 0.67 0.999717
Target:  5'- uCCCGCAUcGAGGAacCCCAGGga-GCu -3'
miRNA:   3'- -GGGCGUAuUUUUUcuGGGUUCacaCG- -5'
28335 5' -45.6 NC_005946.1 + 92297 0.75 0.916507
Target:  5'- cCCCGCAgccuccAGACCCcugagGAGUGUGg -3'
miRNA:   3'- -GGGCGUauuuuuUCUGGG-----UUCACACg -5'
28335 5' -45.6 NC_005946.1 + 93874 0.68 0.99889
Target:  5'- gCCGCAgcggUAGAAGAG-CCCAGGggacagGCc -3'
miRNA:   3'- gGGCGU----AUUUUUUCuGGGUUCaca---CG- -5'
28335 5' -45.6 NC_005946.1 + 95453 0.66 0.999927
Target:  5'- gCCGCAgguGGGAGACCCGccgcagGCu -3'
miRNA:   3'- gGGCGUauuUUUUCUGGGUucaca-CG- -5'
28335 5' -45.6 NC_005946.1 + 95489 0.7 0.993346
Target:  5'- gCCGCAgguGGGAGACCCGccgcaGGUGg-- -3'
miRNA:   3'- gGGCGUauuUUUUCUGGGU-----UCACacg -5'
28335 5' -45.6 NC_005946.1 + 99517 0.66 0.999945
Target:  5'- cCCUGCAaGGAuccuGAGAUCUcAG-GUGCa -3'
miRNA:   3'- -GGGCGUaUUUu---UUCUGGGuUCaCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.