Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28336 | 3' | -57.1 | NC_005946.1 | + | 73295 | 0.66 | 0.799067 |
Target: 5'- gGCgUCGGGUAUAGGGaCCuGCacagacagggaCGACCUg -3' miRNA: 3'- -CGgAGCCUAUAUCUCcGG-CG-----------GCUGGA- -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 79785 | 0.66 | 0.771125 |
Target: 5'- -aCUCGGAUAUGGcGGCgGCagaaGACg- -3' miRNA: 3'- cgGAGCCUAUAUCuCCGgCGg---CUGga -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 20920 | 0.66 | 0.767307 |
Target: 5'- -gCUCGGAggcaaggcccaGGAGGCCcuGUCGGCCUc -3' miRNA: 3'- cgGAGCCUaua--------UCUCCGG--CGGCUGGA- -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 48049 | 0.67 | 0.761543 |
Target: 5'- gGCUUUGGAUuuucugGGAGGCCugggugGgCGGCCUc -3' miRNA: 3'- -CGGAGCCUAua----UCUCCGG------CgGCUGGA- -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 19490 | 0.67 | 0.745971 |
Target: 5'- cGCCcucccuuuuaggUCGG-UGUggaaggaggcuauagAGAGGCUGUCGACCa -3' miRNA: 3'- -CGG------------AGCCuAUA---------------UCUCCGGCGGCUGGa -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 72394 | 0.67 | 0.742035 |
Target: 5'- cUCUUGGGgacggAGAGuaCGCCGACCc -3' miRNA: 3'- cGGAGCCUaua--UCUCcgGCGGCUGGa -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 36174 | 0.67 | 0.722133 |
Target: 5'- aGCCUcacCGGGUAgAGAGGCaGCCcccucucccagGGCCUg -3' miRNA: 3'- -CGGA---GCCUAUaUCUCCGgCGG-----------CUGGA- -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 94415 | 0.67 | 0.709021 |
Target: 5'- uGCCUucCGGAUcgggagcagaGUAcGAGGCCGCCcuggcguacacuguGGCCa -3' miRNA: 3'- -CGGA--GCCUA----------UAU-CUCCGGCGG--------------CUGGa -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 7368 | 0.68 | 0.671153 |
Target: 5'- uGCCgCGGAUGcgaGGAGGUgcaCGCCGGCa- -3' miRNA: 3'- -CGGaGCCUAUa--UCUCCG---GCGGCUGga -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 2251 | 0.68 | 0.660822 |
Target: 5'- -aCUCGGcccacAGGGGCC-CCGACCa -3' miRNA: 3'- cgGAGCCuaua-UCUCCGGcGGCUGGa -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 3458 | 0.72 | 0.440844 |
Target: 5'- aCCggggCGGGUGUAGGGGUcuaCGCCGGuCCUc -3' miRNA: 3'- cGGa---GCCUAUAUCUCCG---GCGGCU-GGA- -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 10938 | 0.74 | 0.345483 |
Target: 5'- aGCCUguaGGAcucuacaccgGGAGuGCCGCCGACCUg -3' miRNA: 3'- -CGGAg--CCUaua-------UCUC-CGGCGGCUGGA- -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 15926 | 0.77 | 0.243614 |
Target: 5'- uGCCgaggCGGucguggccAUGGAGGCCGCCGAUCc -3' miRNA: 3'- -CGGa---GCCua------UAUCUCCGGCGGCUGGa -5' |
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28336 | 3' | -57.1 | NC_005946.1 | + | 2905 | 1.1 | 0.001276 |
Target: 5'- cGCCUCGGAUAUAGAGGCCGCCGACCUg -3' miRNA: 3'- -CGGAGCCUAUAUCUCCGGCGGCUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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