miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28336 3' -57.1 NC_005946.1 + 73295 0.66 0.799067
Target:  5'- gGCgUCGGGUAUAGGGaCCuGCacagacagggaCGACCUg -3'
miRNA:   3'- -CGgAGCCUAUAUCUCcGG-CG-----------GCUGGA- -5'
28336 3' -57.1 NC_005946.1 + 79785 0.66 0.771125
Target:  5'- -aCUCGGAUAUGGcGGCgGCagaaGACg- -3'
miRNA:   3'- cgGAGCCUAUAUCuCCGgCGg---CUGga -5'
28336 3' -57.1 NC_005946.1 + 20920 0.66 0.767307
Target:  5'- -gCUCGGAggcaaggcccaGGAGGCCcuGUCGGCCUc -3'
miRNA:   3'- cgGAGCCUaua--------UCUCCGG--CGGCUGGA- -5'
28336 3' -57.1 NC_005946.1 + 48049 0.67 0.761543
Target:  5'- gGCUUUGGAUuuucugGGAGGCCugggugGgCGGCCUc -3'
miRNA:   3'- -CGGAGCCUAua----UCUCCGG------CgGCUGGA- -5'
28336 3' -57.1 NC_005946.1 + 19490 0.67 0.745971
Target:  5'- cGCCcucccuuuuaggUCGG-UGUggaaggaggcuauagAGAGGCUGUCGACCa -3'
miRNA:   3'- -CGG------------AGCCuAUA---------------UCUCCGGCGGCUGGa -5'
28336 3' -57.1 NC_005946.1 + 72394 0.67 0.742035
Target:  5'- cUCUUGGGgacggAGAGuaCGCCGACCc -3'
miRNA:   3'- cGGAGCCUaua--UCUCcgGCGGCUGGa -5'
28336 3' -57.1 NC_005946.1 + 36174 0.67 0.722133
Target:  5'- aGCCUcacCGGGUAgAGAGGCaGCCcccucucccagGGCCUg -3'
miRNA:   3'- -CGGA---GCCUAUaUCUCCGgCGG-----------CUGGA- -5'
28336 3' -57.1 NC_005946.1 + 94415 0.67 0.709021
Target:  5'- uGCCUucCGGAUcgggagcagaGUAcGAGGCCGCCcuggcguacacuguGGCCa -3'
miRNA:   3'- -CGGA--GCCUA----------UAU-CUCCGGCGG--------------CUGGa -5'
28336 3' -57.1 NC_005946.1 + 7368 0.68 0.671153
Target:  5'- uGCCgCGGAUGcgaGGAGGUgcaCGCCGGCa- -3'
miRNA:   3'- -CGGaGCCUAUa--UCUCCG---GCGGCUGga -5'
28336 3' -57.1 NC_005946.1 + 2251 0.68 0.660822
Target:  5'- -aCUCGGcccacAGGGGCC-CCGACCa -3'
miRNA:   3'- cgGAGCCuaua-UCUCCGGcGGCUGGa -5'
28336 3' -57.1 NC_005946.1 + 3458 0.72 0.440844
Target:  5'- aCCggggCGGGUGUAGGGGUcuaCGCCGGuCCUc -3'
miRNA:   3'- cGGa---GCCUAUAUCUCCG---GCGGCU-GGA- -5'
28336 3' -57.1 NC_005946.1 + 10938 0.74 0.345483
Target:  5'- aGCCUguaGGAcucuacaccgGGAGuGCCGCCGACCUg -3'
miRNA:   3'- -CGGAg--CCUaua-------UCUC-CGGCGGCUGGA- -5'
28336 3' -57.1 NC_005946.1 + 15926 0.77 0.243614
Target:  5'- uGCCgaggCGGucguggccAUGGAGGCCGCCGAUCc -3'
miRNA:   3'- -CGGa---GCCua------UAUCUCCGGCGGCUGGa -5'
28336 3' -57.1 NC_005946.1 + 2905 1.1 0.001276
Target:  5'- cGCCUCGGAUAUAGAGGCCGCCGACCUg -3'
miRNA:   3'- -CGGAGCCUAUAUCUCCGGCGGCUGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.