miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28336 5' -63.7 NC_005946.1 + 59709 0.66 0.500795
Target:  5'- uGGCgGCCGGCUGGGCaa--GGGUaaaguCCGg -3'
miRNA:   3'- cCUG-CGGCCGACCCGgugaUCCG-----GGC- -5'
28336 5' -63.7 NC_005946.1 + 72757 0.66 0.499859
Target:  5'- aGGGCGCUcccgccaGGCUGGcgugguccggcGCUGCgGGGUCCGc -3'
miRNA:   3'- -CCUGCGG-------CCGACC-----------CGGUGaUCCGGGC- -5'
28336 5' -63.7 NC_005946.1 + 82810 0.66 0.491472
Target:  5'- -cACGUguaCGGCaGGGCCGCcAGGCaCCu -3'
miRNA:   3'- ccUGCG---GCCGaCCCGGUGaUCCG-GGc -5'
28336 5' -63.7 NC_005946.1 + 20729 0.66 0.488691
Target:  5'- uGGACGCCguggucaccagccuGGCc-GGCCucgAGGCCCu -3'
miRNA:   3'- -CCUGCGG--------------CCGacCCGGugaUCCGGGc -5'
28336 5' -63.7 NC_005946.1 + 79299 0.66 0.479474
Target:  5'- cGGACGCggcggcagagaaugCGGgaGGGUCGCggaccuugAGGCCg- -3'
miRNA:   3'- -CCUGCG--------------GCCgaCCCGGUGa-------UCCGGgc -5'
28336 5' -63.7 NC_005946.1 + 49912 0.66 0.464005
Target:  5'- cGGuCuCUGGCagGGGCCACggcaccgcaAGGCCCc -3'
miRNA:   3'- -CCuGcGGCCGa-CCCGGUGa--------UCCGGGc -5'
28336 5' -63.7 NC_005946.1 + 61468 0.66 0.464005
Target:  5'- gGGACGCCGccCU-GGCCgacaggauGCUccucAGGCCCGa -3'
miRNA:   3'- -CCUGCGGCc-GAcCCGG--------UGA----UCCGGGC- -5'
28336 5' -63.7 NC_005946.1 + 73266 0.66 0.464005
Target:  5'- gGGACGaCCuGGCcaacaagagggUGGacGCCACcGGGCCCc -3'
miRNA:   3'- -CCUGC-GG-CCG-----------ACC--CGGUGaUCCGGGc -5'
28336 5' -63.7 NC_005946.1 + 26408 0.66 0.455029
Target:  5'- gGGA-GCCGGUUucaGGCUGCUccuGGCCCa -3'
miRNA:   3'- -CCUgCGGCCGAc--CCGGUGAu--CCGGGc -5'
28336 5' -63.7 NC_005946.1 + 56287 0.67 0.437362
Target:  5'- aGACGUCGGCcucuGCCGCcGGGUCCa -3'
miRNA:   3'- cCUGCGGCCGacc-CGGUGaUCCGGGc -5'
28336 5' -63.7 NC_005946.1 + 36620 0.67 0.437362
Target:  5'- gGGACGCCGucucccauGCcgagUGGaccGCCACcGGGUCCGa -3'
miRNA:   3'- -CCUGCGGC--------CG----ACC---CGGUGaUCCGGGC- -5'
28336 5' -63.7 NC_005946.1 + 41604 0.67 0.428678
Target:  5'- cGGgGCCGGC-GGGaCCAgaAGGaCCCa -3'
miRNA:   3'- cCUgCGGCCGaCCC-GGUgaUCC-GGGc -5'
28336 5' -63.7 NC_005946.1 + 66371 0.68 0.370869
Target:  5'- uGGugGCUGacuacgaCUGGGaCCACaacgAGGCCCu -3'
miRNA:   3'- -CCugCGGCc------GACCC-GGUGa---UCCGGGc -5'
28336 5' -63.7 NC_005946.1 + 75133 0.68 0.355358
Target:  5'- aGGGCcagGCCGGaccugGGaGCCACccugccguagAGGCCCGg -3'
miRNA:   3'- -CCUG---CGGCCga---CC-CGGUGa---------UCCGGGC- -5'
28336 5' -63.7 NC_005946.1 + 79441 0.68 0.355358
Target:  5'- uGGACGCUccugGGCUGGaCCACgaccGCCCu -3'
miRNA:   3'- -CCUGCGG----CCGACCcGGUGauc-CGGGc -5'
28336 5' -63.7 NC_005946.1 + 83008 0.69 0.33296
Target:  5'- cGGAgGCaCGGCgagGGGaguCCACggcaugGGGUCCGg -3'
miRNA:   3'- -CCUgCG-GCCGa--CCC---GGUGa-----UCCGGGC- -5'
28336 5' -63.7 NC_005946.1 + 76664 0.69 0.325728
Target:  5'- gGGAUGaCGGCaaccagGGGCCcagGGGCCCa -3'
miRNA:   3'- -CCUGCgGCCGa-----CCCGGugaUCCGGGc -5'
28336 5' -63.7 NC_005946.1 + 28594 0.69 0.318613
Target:  5'- uGGCGUCGGCcgGGGCCG-UGGuGCCgGg -3'
miRNA:   3'- cCUGCGGCCGa-CCCGGUgAUC-CGGgC- -5'
28336 5' -63.7 NC_005946.1 + 44796 0.69 0.311616
Target:  5'- aGGGCGCUguuGGCguuggGGGCCAC--GGCCa- -3'
miRNA:   3'- -CCUGCGG---CCGa----CCCGGUGauCCGGgc -5'
28336 5' -63.7 NC_005946.1 + 67554 0.7 0.268363
Target:  5'- uGGAgGaCCGGCUGGGCCcugcACUGguggcaggcgaagccGGCCUu -3'
miRNA:   3'- -CCUgC-GGCCGACCCGG----UGAU---------------CCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.