Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28336 | 5' | -63.7 | NC_005946.1 | + | 2870 | 1.1 | 0.000334 |
Target: 5'- aGGACGCCGGCUGGGCCACUAGGCCCGa -3' miRNA: 3'- -CCUGCGGCCGACCCGGUGAUCCGGGC- -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 76325 | 0.71 | 0.236686 |
Target: 5'- aGACGUgGGagguaugGGGCCAgaGGGCCCa -3' miRNA: 3'- cCUGCGgCCga-----CCCGGUgaUCCGGGc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 42191 | 0.71 | 0.25388 |
Target: 5'- uGGAC-CCuggGGCcacucGGGCCACUcGGGCCCa -3' miRNA: 3'- -CCUGcGG---CCGa----CCCGGUGA-UCCGGGc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 78988 | 0.7 | 0.265903 |
Target: 5'- cGGcguACGCCagGGCcggGGGCCACaGGGCuuGg -3' miRNA: 3'- -CC---UGCGG--CCGa--CCCGGUGaUCCGggC- -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 67554 | 0.7 | 0.268363 |
Target: 5'- uGGAgGaCCGGCUGGGCCcugcACUGguggcaggcgaagccGGCCUu -3' miRNA: 3'- -CCUgC-GGCCGACCCGG----UGAU---------------CCGGGc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 44796 | 0.69 | 0.311616 |
Target: 5'- aGGGCGCUguuGGCguuggGGGCCAC--GGCCa- -3' miRNA: 3'- -CCUGCGG---CCGa----CCCGGUGauCCGGgc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 28594 | 0.69 | 0.318613 |
Target: 5'- uGGCGUCGGCcgGGGCCG-UGGuGCCgGg -3' miRNA: 3'- cCUGCGGCCGa-CCCGGUgAUC-CGGgC- -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 76664 | 0.69 | 0.325728 |
Target: 5'- gGGAUGaCGGCaaccagGGGCCcagGGGCCCa -3' miRNA: 3'- -CCUGCgGCCGa-----CCCGGugaUCCGGGc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 83008 | 0.69 | 0.33296 |
Target: 5'- cGGAgGCaCGGCgagGGGaguCCACggcaugGGGUCCGg -3' miRNA: 3'- -CCUgCG-GCCGa--CCC---GGUGa-----UCCGGGC- -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 79441 | 0.68 | 0.355358 |
Target: 5'- uGGACGCUccugGGCUGGaCCACgaccGCCCu -3' miRNA: 3'- -CCUGCGG----CCGACCcGGUGauc-CGGGc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 75133 | 0.68 | 0.355358 |
Target: 5'- aGGGCcagGCCGGaccugGGaGCCACccugccguagAGGCCCGg -3' miRNA: 3'- -CCUG---CGGCCga---CC-CGGUGa---------UCCGGGC- -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 66371 | 0.68 | 0.370869 |
Target: 5'- uGGugGCUGacuacgaCUGGGaCCACaacgAGGCCCu -3' miRNA: 3'- -CCugCGGCc------GACCC-GGUGa---UCCGGGc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 41604 | 0.67 | 0.428678 |
Target: 5'- cGGgGCCGGC-GGGaCCAgaAGGaCCCa -3' miRNA: 3'- cCUgCGGCCGaCCC-GGUgaUCC-GGGc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 56287 | 0.67 | 0.437362 |
Target: 5'- aGACGUCGGCcucuGCCGCcGGGUCCa -3' miRNA: 3'- cCUGCGGCCGacc-CGGUGaUCCGGGc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 36620 | 0.67 | 0.437362 |
Target: 5'- gGGACGCCGucucccauGCcgagUGGaccGCCACcGGGUCCGa -3' miRNA: 3'- -CCUGCGGC--------CG----ACC---CGGUGaUCCGGGC- -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 26408 | 0.66 | 0.455029 |
Target: 5'- gGGA-GCCGGUUucaGGCUGCUccuGGCCCa -3' miRNA: 3'- -CCUgCGGCCGAc--CCGGUGAu--CCGGGc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 73266 | 0.66 | 0.464005 |
Target: 5'- gGGACGaCCuGGCcaacaagagggUGGacGCCACcGGGCCCc -3' miRNA: 3'- -CCUGC-GG-CCG-----------ACC--CGGUGaUCCGGGc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 61468 | 0.66 | 0.464005 |
Target: 5'- gGGACGCCGccCU-GGCCgacaggauGCUccucAGGCCCGa -3' miRNA: 3'- -CCUGCGGCc-GAcCCGG--------UGA----UCCGGGC- -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 49912 | 0.66 | 0.464005 |
Target: 5'- cGGuCuCUGGCagGGGCCACggcaccgcaAGGCCCc -3' miRNA: 3'- -CCuGcGGCCGa-CCCGGUGa--------UCCGGGc -5' |
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28336 | 5' | -63.7 | NC_005946.1 | + | 79299 | 0.66 | 0.479474 |
Target: 5'- cGGACGCggcggcagagaaugCGGgaGGGUCGCggaccuugAGGCCg- -3' miRNA: 3'- -CCUGCG--------------GCCgaCCCGGUGa-------UCCGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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