miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28337	3'	-54.8	NC_005946.1	+	22194	0.66	0.866004
	Target:  5'- cGGCGGCUacccucgGGCUGGcugcccuGGCcGCggccgcUCCCCu -3' miRNA:   3'- -CCGCUGA-------CCGACC-------UCG-UGaaa---AGGGG- -5'
28337	3'	-54.8	NC_005946.1	+	12061	0.67	0.859756
	Target:  5'- gGGa-GCUGGC-GGAGCAgga-UCCCCu -3' miRNA:   3'- -CCgcUGACCGaCCUCGUgaaaAGGGG- -5'
28337	3'	-54.8	NC_005946.1	+	9489	0.67	0.850937
	Target:  5'- aGGCG-UUGGUcaggaacUGGAGCuuguccACcagUUUCCCCg -3' miRNA:   3'- -CCGCuGACCG-------ACCUCG------UGa--AAAGGGG- -5'
28337	3'	-54.8	NC_005946.1	+	86408	0.67	0.827363
	Target:  5'- uGGCGGCguaGGCUGGAGacacagagcuagacUGCUUgaaccuccuguagCCCCu -3' miRNA:   3'- -CCGCUGa--CCGACCUC--------------GUGAAaa-----------GGGG- -5'
28337	3'	-54.8	NC_005946.1	+	74029	0.68	0.808703
	Target:  5'- --gGACcccaaggGGCUGGAGaCugUUUaCCCCa -3' miRNA:   3'- ccgCUGa------CCGACCUC-GugAAAaGGGG- -5'
28337	3'	-54.8	NC_005946.1	+	52351	0.7	0.679972
	Target:  5'- cGGgGACauagaagagGGcCUGGAGCuCUUUggCCCCg -3' miRNA:   3'- -CCgCUGa--------CC-GACCUCGuGAAAa-GGGG- -5'
28337	3'	-54.8	NC_005946.1	+	73521	0.7	0.658994
	Target:  5'- uGGCGGauCUGGCca-AGCACg--UCCCCg -3' miRNA:   3'- -CCGCU--GACCGaccUCGUGaaaAGGGG- -5'
28337	3'	-54.8	NC_005946.1	+	34771	0.72	0.564466
	Target:  5'- cGGCGGCggGGUaGGGGgACUUUcUCCCa -3' miRNA:   3'- -CCGCUGa-CCGaCCUCgUGAAAaGGGG- -5'
28337	3'	-54.8	NC_005946.1	+	12747	0.72	0.542792
	Target:  5'- gGGCGgagggagGCaGGCUGGAGCugUcugcUCCCUa -3' miRNA:   3'- -CCGC-------UGaCCGACCUCGugAaa--AGGGG- -5'
28337	3'	-54.8	NC_005946.1	+	3402	1.14	0.001105
	Target:  5'- cGGCGACUGGCUGGAGCACUUUUCCCCu -3' miRNA:   3'- -CCGCUGACCGACCUCGUGAAAAGGGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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