miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28337 5' -57.6 NC_005946.1 + 70123 0.66 0.726213
Target:  5'- aGCGGUGGuCAGgaGCUggUCCAGUGGa- -3'
miRNA:   3'- -UGCCACCuGUUgaCGG--AGGUCGUCcg -5'
28337 5' -57.6 NC_005946.1 + 44021 0.67 0.716105
Target:  5'- gGCGGcguaGGAUccccuccuGACcuUGCCUugCCAGUAGGCa -3'
miRNA:   3'- -UGCCa---CCUG--------UUG--ACGGA--GGUCGUCCG- -5'
28337 5' -57.6 NC_005946.1 + 88336 0.67 0.705923
Target:  5'- gGCGGccGGGCAggcACUGgaCCUCCu-CAGGCg -3'
miRNA:   3'- -UGCCa-CCUGU---UGAC--GGAGGucGUCCG- -5'
28337 5' -57.6 NC_005946.1 + 73869 0.67 0.695675
Target:  5'- -gGGUGGugG--UGCCUCaCAuCAGGCc -3'
miRNA:   3'- ugCCACCugUugACGGAG-GUcGUCCG- -5'
28337 5' -57.6 NC_005946.1 + 12622 0.67 0.675023
Target:  5'- gACGaccugagGGACAGcCUGCC-CCAGgAGGUg -3'
miRNA:   3'- -UGCca-----CCUGUU-GACGGaGGUCgUCCG- -5'
28337 5' -57.6 NC_005946.1 + 40143 0.68 0.654225
Target:  5'- -gGGcUGGAgAg--GCuCUCCGGCGGGCa -3'
miRNA:   3'- ugCC-ACCUgUugaCG-GAGGUCGUCCG- -5'
28337 5' -57.6 NC_005946.1 + 21837 0.68 0.602059
Target:  5'- -gGGUGGcAC-ACUGCCgCCAgGguGGCc -3'
miRNA:   3'- ugCCACC-UGuUGACGGaGGU-CguCCG- -5'
28337 5' -57.6 NC_005946.1 + 35612 0.69 0.540287
Target:  5'- cACGGUcccGGccGCGGCcuggGCUUCCAGCAGaGCc -3'
miRNA:   3'- -UGCCA---CC--UGUUGa---CGGAGGUCGUC-CG- -5'
28337 5' -57.6 NC_005946.1 + 35164 0.7 0.530178
Target:  5'- gACGG-GGGCAugUcauaGCCUCCAG--GGCa -3'
miRNA:   3'- -UGCCaCCUGUugA----CGGAGGUCguCCG- -5'
28337 5' -57.6 NC_005946.1 + 69041 0.7 0.500295
Target:  5'- gAUGGUGGGCAugACUcCCUUUuuuguGGCGGGCu -3'
miRNA:   3'- -UGCCACCUGU--UGAcGGAGG-----UCGUCCG- -5'
28337 5' -57.6 NC_005946.1 + 6969 0.7 0.489523
Target:  5'- cAUGGUGGACGuagcccgACUGUCUaCAGUcGGCg -3'
miRNA:   3'- -UGCCACCUGU-------UGACGGAgGUCGuCCG- -5'
28337 5' -57.6 NC_005946.1 + 76379 0.73 0.37264
Target:  5'- aGCGGUGGGucCAACcgGUC-CCAGCGGGg -3'
miRNA:   3'- -UGCCACCU--GUUGa-CGGaGGUCGUCCg -5'
28337 5' -57.6 NC_005946.1 + 13467 0.73 0.33272
Target:  5'- -gGGUGGAgGAgaGCCaCCGGCAGGg -3'
miRNA:   3'- ugCCACCUgUUgaCGGaGGUCGUCCg -5'
28337 5' -57.6 NC_005946.1 + 3366 1.1 0.001013
Target:  5'- gACGGUGGACAACUGCCUCCAGCAGGCc -3'
miRNA:   3'- -UGCCACCUGUUGACGGAGGUCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.