miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28338 5' -59.4 NC_005946.1 + 42344 0.66 0.736691
Target:  5'- gGGCcCCG-CGUCGUCCGcuAUCagaUCCCc -3'
miRNA:   3'- aCUGcGGCaGCAGCAGGC--UGGg--AGGG- -5'
28338 5' -59.4 NC_005946.1 + 10528 0.66 0.717352
Target:  5'- gGACcCCG-CGUCGUCCaGCCacaCCCc -3'
miRNA:   3'- aCUGcGGCaGCAGCAGGcUGGga-GGG- -5'
28338 5' -59.4 NC_005946.1 + 80576 0.66 0.717352
Target:  5'- aGAUGUCGcuaagaaCGUCCGGCCaUCCCg -3'
miRNA:   3'- aCUGCGGCagca---GCAGGCUGGgAGGG- -5'
28338 5' -59.4 NC_005946.1 + 85635 0.66 0.707573
Target:  5'- cGGCGCCGUCacCGcUCaCGGUCUUCCCu -3'
miRNA:   3'- aCUGCGGCAGcaGC-AG-GCUGGGAGGG- -5'
28338 5' -59.4 NC_005946.1 + 75716 0.67 0.677901
Target:  5'- cUGAUGUCGUuggacuccaggaUGUCGg-CGGCCuCUCCCu -3'
miRNA:   3'- -ACUGCGGCA------------GCAGCagGCUGG-GAGGG- -5'
28338 5' -59.4 NC_005946.1 + 52933 0.67 0.676905
Target:  5'- cGAUGCUGUccgcuccCGUCGUgaGAgCCUCCg -3'
miRNA:   3'- aCUGCGGCA-------GCAGCAggCUgGGAGGg -5'
28338 5' -59.4 NC_005946.1 + 27979 0.67 0.657925
Target:  5'- aGACGCCGaaaCGUCGUCCuGCUCgaagcaCUCu -3'
miRNA:   3'- aCUGCGGCa--GCAGCAGGcUGGGa-----GGG- -5'
28338 5' -59.4 NC_005946.1 + 74459 0.67 0.648906
Target:  5'- cGACcCCGUCGUCaucgggcuccucguaUCCuGCCCUCUCg -3'
miRNA:   3'- aCUGcGGCAGCAGc--------------AGGcUGGGAGGG- -5'
28338 5' -59.4 NC_005946.1 + 7777 0.68 0.636866
Target:  5'- -uGCGUCaUCGUCGU-CGACCCccgccgaUCCCa -3'
miRNA:   3'- acUGCGGcAGCAGCAgGCUGGG-------AGGG- -5'
28338 5' -59.4 NC_005946.1 + 72387 0.68 0.627832
Target:  5'- gGACGgaGa-GUaCG-CCGACCCUCCCg -3'
miRNA:   3'- aCUGCggCagCA-GCaGGCUGGGAGGG- -5'
28338 5' -59.4 NC_005946.1 + 67349 0.68 0.597765
Target:  5'- aUGACGCCGUC-UCGacguaaaagCCGgGCCUgaagCCCg -3'
miRNA:   3'- -ACUGCGGCAGcAGCa--------GGC-UGGGa---GGG- -5'
28338 5' -59.4 NC_005946.1 + 104168 0.69 0.567916
Target:  5'- aGACgGCC-UCGcCGUCCcuGACCUUCUCg -3'
miRNA:   3'- aCUG-CGGcAGCaGCAGG--CUGGGAGGG- -5'
28338 5' -59.4 NC_005946.1 + 3037 0.69 0.538456
Target:  5'- aGACaCCGaCGUCGUCCcGgCCUCCa -3'
miRNA:   3'- aCUGcGGCaGCAGCAGGcUgGGAGGg -5'
28338 5' -59.4 NC_005946.1 + 20728 0.7 0.509538
Target:  5'- gGACGCCGUgGUCaccagccuggCCGGCCUcgaggCCCu -3'
miRNA:   3'- aCUGCGGCAgCAGca--------GGCUGGGa----GGG- -5'
28338 5' -59.4 NC_005946.1 + 22908 0.71 0.462887
Target:  5'- cGcACG-UGUCGUCGUCUGugCCUUCUc -3'
miRNA:   3'- aC-UGCgGCAGCAGCAGGCugGGAGGG- -5'
28338 5' -59.4 NC_005946.1 + 86848 0.77 0.207631
Target:  5'- -aGCGUCGUUGUCGU-CGACCCUCUUg -3'
miRNA:   3'- acUGCGGCAGCAGCAgGCUGGGAGGG- -5'
28338 5' -59.4 NC_005946.1 + 21351 0.79 0.150601
Target:  5'- gGACGCCGUggaCGUCGUCaccCCCUCCUg -3'
miRNA:   3'- aCUGCGGCA---GCAGCAGgcuGGGAGGG- -5'
28338 5' -59.4 NC_005946.1 + 3734 1.12 0.000755
Target:  5'- aUGACGCCGUCGUCGUCCGACCCUCCCa -3'
miRNA:   3'- -ACUGCGGCAGCAGCAGGCUGGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.