Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28338 | 5' | -59.4 | NC_005946.1 | + | 3734 | 1.12 | 0.000755 |
Target: 5'- aUGACGCCGUCGUCGUCCGACCCUCCCa -3' miRNA: 3'- -ACUGCGGCAGCAGCAGGCUGGGAGGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 21351 | 0.79 | 0.150601 |
Target: 5'- gGACGCCGUggaCGUCGUCaccCCCUCCUg -3' miRNA: 3'- aCUGCGGCA---GCAGCAGgcuGGGAGGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 86848 | 0.77 | 0.207631 |
Target: 5'- -aGCGUCGUUGUCGU-CGACCCUCUUg -3' miRNA: 3'- acUGCGGCAGCAGCAgGCUGGGAGGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 22908 | 0.71 | 0.462887 |
Target: 5'- cGcACG-UGUCGUCGUCUGugCCUUCUc -3' miRNA: 3'- aC-UGCgGCAGCAGCAGGCugGGAGGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 20728 | 0.7 | 0.509538 |
Target: 5'- gGACGCCGUgGUCaccagccuggCCGGCCUcgaggCCCu -3' miRNA: 3'- aCUGCGGCAgCAGca--------GGCUGGGa----GGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 3037 | 0.69 | 0.538456 |
Target: 5'- aGACaCCGaCGUCGUCCcGgCCUCCa -3' miRNA: 3'- aCUGcGGCaGCAGCAGGcUgGGAGGg -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 104168 | 0.69 | 0.567916 |
Target: 5'- aGACgGCC-UCGcCGUCCcuGACCUUCUCg -3' miRNA: 3'- aCUG-CGGcAGCaGCAGG--CUGGGAGGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 67349 | 0.68 | 0.597765 |
Target: 5'- aUGACGCCGUC-UCGacguaaaagCCGgGCCUgaagCCCg -3' miRNA: 3'- -ACUGCGGCAGcAGCa--------GGC-UGGGa---GGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 72387 | 0.68 | 0.627832 |
Target: 5'- gGACGgaGa-GUaCG-CCGACCCUCCCg -3' miRNA: 3'- aCUGCggCagCA-GCaGGCUGGGAGGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 7777 | 0.68 | 0.636866 |
Target: 5'- -uGCGUCaUCGUCGU-CGACCCccgccgaUCCCa -3' miRNA: 3'- acUGCGGcAGCAGCAgGCUGGG-------AGGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 74459 | 0.67 | 0.648906 |
Target: 5'- cGACcCCGUCGUCaucgggcuccucguaUCCuGCCCUCUCg -3' miRNA: 3'- aCUGcGGCAGCAGc--------------AGGcUGGGAGGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 27979 | 0.67 | 0.657925 |
Target: 5'- aGACGCCGaaaCGUCGUCCuGCUCgaagcaCUCu -3' miRNA: 3'- aCUGCGGCa--GCAGCAGGcUGGGa-----GGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 52933 | 0.67 | 0.676905 |
Target: 5'- cGAUGCUGUccgcuccCGUCGUgaGAgCCUCCg -3' miRNA: 3'- aCUGCGGCA-------GCAGCAggCUgGGAGGg -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 75716 | 0.67 | 0.677901 |
Target: 5'- cUGAUGUCGUuggacuccaggaUGUCGg-CGGCCuCUCCCu -3' miRNA: 3'- -ACUGCGGCA------------GCAGCagGCUGG-GAGGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 85635 | 0.66 | 0.707573 |
Target: 5'- cGGCGCCGUCacCGcUCaCGGUCUUCCCu -3' miRNA: 3'- aCUGCGGCAGcaGC-AG-GCUGGGAGGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 80576 | 0.66 | 0.717352 |
Target: 5'- aGAUGUCGcuaagaaCGUCCGGCCaUCCCg -3' miRNA: 3'- aCUGCGGCagca---GCAGGCUGGgAGGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 10528 | 0.66 | 0.717352 |
Target: 5'- gGACcCCG-CGUCGUCCaGCCacaCCCc -3' miRNA: 3'- aCUGcGGCaGCAGCAGGcUGGga-GGG- -5' |
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28338 | 5' | -59.4 | NC_005946.1 | + | 42344 | 0.66 | 0.736691 |
Target: 5'- gGGCcCCG-CGUCGUCCGcuAUCagaUCCCc -3' miRNA: 3'- aCUGcGGCaGCAGCAGGC--UGGg--AGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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