Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28340 | 3' | -55.7 | NC_005946.1 | + | 41961 | 0.66 | 0.847641 |
Target: 5'- -cGgGUGGACccgGGGGUCCcuugUCGCCcuuUGGc -3' miRNA: 3'- gaCgUACCUG---UCCCAGG----AGCGGu--AUC- -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 79038 | 0.66 | 0.839302 |
Target: 5'- cCUGCAgccGugGGGG-CC-CGCCGUAa -3' miRNA: 3'- -GACGUac-CugUCCCaGGaGCGGUAUc -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 59509 | 0.66 | 0.822029 |
Target: 5'- -aGUGUGG-UGGGGUCCagGCCcgAGg -3' miRNA: 3'- gaCGUACCuGUCCCAGGagCGGuaUC- -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 84882 | 0.66 | 0.813113 |
Target: 5'- cCUGCGaggugggucaaGGACAGGGUgUUUGCgGUAGu -3' miRNA: 3'- -GACGUa----------CCUGUCCCAgGAGCGgUAUC- -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 25315 | 0.68 | 0.726127 |
Target: 5'- aCUGU-UGGAaaacgcauuuGGGUCCUCGUCGUAa -3' miRNA: 3'- -GACGuACCUgu--------CCCAGGAGCGGUAUc -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 61275 | 0.68 | 0.726127 |
Target: 5'- -gGCggGGACGGGGUUCgaCGCCugcgAGa -3' miRNA: 3'- gaCGuaCCUGUCCCAGGa-GCGGua--UC- -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 68282 | 0.7 | 0.632122 |
Target: 5'- uCUGCGgcgGuGACGGGGUCCUUGUUg--- -3' miRNA: 3'- -GACGUa--C-CUGUCCCAGGAGCGGuauc -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 102352 | 0.71 | 0.579449 |
Target: 5'- uUGaCAUggcGGugAGGGU-CUCGCCGUGGa -3' miRNA: 3'- gAC-GUA---CCugUCCCAgGAGCGGUAUC- -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 72705 | 0.71 | 0.558607 |
Target: 5'- -nGaCGUGGACGGGGUCCUgugCGgCGUGa -3' miRNA: 3'- gaC-GUACCUGUCCCAGGA---GCgGUAUc -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 95165 | 0.71 | 0.527767 |
Target: 5'- gUGCuggGGGCGGaGGUCCUCGCgGg-- -3' miRNA: 3'- gACGua-CCUGUC-CCAGGAGCGgUauc -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 46836 | 0.72 | 0.517625 |
Target: 5'- gCUGCcgGGAgaCAGGGUCCUgGuCCAc-- -3' miRNA: 3'- -GACGuaCCU--GUCCCAGGAgC-GGUauc -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 49425 | 0.73 | 0.468196 |
Target: 5'- cCUGgAggGGACGGGGUCCUCGUagacgGGa -3' miRNA: 3'- -GACgUa-CCUGUCCCAGGAGCGgua--UC- -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 72738 | 0.73 | 0.449108 |
Target: 5'- -gGCGUGGuccggcgcuGCGGGGUCCgCGuCCGUGGa -3' miRNA: 3'- gaCGUACC---------UGUCCCAGGaGC-GGUAUC- -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 26705 | 0.77 | 0.271583 |
Target: 5'- -cGCGUGGucCAGGGUCCUCGCa---- -3' miRNA: 3'- gaCGUACCu-GUCCCAGGAGCGguauc -5' |
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28340 | 3' | -55.7 | NC_005946.1 | + | 4434 | 1.08 | 0.002197 |
Target: 5'- uCUGCAUGGACAGGGUCCUCGCCAUAGu -3' miRNA: 3'- -GACGUACCUGUCCCAGGAGCGGUAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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