miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28340 3' -55.7 NC_005946.1 + 41961 0.66 0.847641
Target:  5'- -cGgGUGGACccgGGGGUCCcuugUCGCCcuuUGGc -3'
miRNA:   3'- gaCgUACCUG---UCCCAGG----AGCGGu--AUC- -5'
28340 3' -55.7 NC_005946.1 + 79038 0.66 0.839302
Target:  5'- cCUGCAgccGugGGGG-CC-CGCCGUAa -3'
miRNA:   3'- -GACGUac-CugUCCCaGGaGCGGUAUc -5'
28340 3' -55.7 NC_005946.1 + 59509 0.66 0.822029
Target:  5'- -aGUGUGG-UGGGGUCCagGCCcgAGg -3'
miRNA:   3'- gaCGUACCuGUCCCAGGagCGGuaUC- -5'
28340 3' -55.7 NC_005946.1 + 84882 0.66 0.813113
Target:  5'- cCUGCGaggugggucaaGGACAGGGUgUUUGCgGUAGu -3'
miRNA:   3'- -GACGUa----------CCUGUCCCAgGAGCGgUAUC- -5'
28340 3' -55.7 NC_005946.1 + 61275 0.68 0.726127
Target:  5'- -gGCggGGACGGGGUUCgaCGCCugcgAGa -3'
miRNA:   3'- gaCGuaCCUGUCCCAGGa-GCGGua--UC- -5'
28340 3' -55.7 NC_005946.1 + 25315 0.68 0.726127
Target:  5'- aCUGU-UGGAaaacgcauuuGGGUCCUCGUCGUAa -3'
miRNA:   3'- -GACGuACCUgu--------CCCAGGAGCGGUAUc -5'
28340 3' -55.7 NC_005946.1 + 68282 0.7 0.632122
Target:  5'- uCUGCGgcgGuGACGGGGUCCUUGUUg--- -3'
miRNA:   3'- -GACGUa--C-CUGUCCCAGGAGCGGuauc -5'
28340 3' -55.7 NC_005946.1 + 102352 0.71 0.579449
Target:  5'- uUGaCAUggcGGugAGGGU-CUCGCCGUGGa -3'
miRNA:   3'- gAC-GUA---CCugUCCCAgGAGCGGUAUC- -5'
28340 3' -55.7 NC_005946.1 + 72705 0.71 0.558607
Target:  5'- -nGaCGUGGACGGGGUCCUgugCGgCGUGa -3'
miRNA:   3'- gaC-GUACCUGUCCCAGGA---GCgGUAUc -5'
28340 3' -55.7 NC_005946.1 + 95165 0.71 0.527767
Target:  5'- gUGCuggGGGCGGaGGUCCUCGCgGg-- -3'
miRNA:   3'- gACGua-CCUGUC-CCAGGAGCGgUauc -5'
28340 3' -55.7 NC_005946.1 + 46836 0.72 0.517625
Target:  5'- gCUGCcgGGAgaCAGGGUCCUgGuCCAc-- -3'
miRNA:   3'- -GACGuaCCU--GUCCCAGGAgC-GGUauc -5'
28340 3' -55.7 NC_005946.1 + 49425 0.73 0.468196
Target:  5'- cCUGgAggGGACGGGGUCCUCGUagacgGGa -3'
miRNA:   3'- -GACgUa-CCUGUCCCAGGAGCGgua--UC- -5'
28340 3' -55.7 NC_005946.1 + 72738 0.73 0.449108
Target:  5'- -gGCGUGGuccggcgcuGCGGGGUCCgCGuCCGUGGa -3'
miRNA:   3'- gaCGUACC---------UGUCCCAGGaGC-GGUAUC- -5'
28340 3' -55.7 NC_005946.1 + 26705 0.77 0.271583
Target:  5'- -cGCGUGGucCAGGGUCCUCGCa---- -3'
miRNA:   3'- gaCGUACCu-GUCCCAGGAGCGguauc -5'
28340 3' -55.7 NC_005946.1 + 4434 1.08 0.002197
Target:  5'- uCUGCAUGGACAGGGUCCUCGCCAUAGu -3'
miRNA:   3'- -GACGUACCUGUCCCAGGAGCGGUAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.