Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28341 | 3' | -55.7 | NC_005946.1 | + | 37225 | 0.66 | 0.879795 |
Target: 5'- --cGUGGGGCUUGACaUGcaccAGGUCCCUg -3' miRNA: 3'- cccCACCUUGGACUGcAC----UCUAGGGA- -5' |
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28341 | 3' | -55.7 | NC_005946.1 | + | 86956 | 0.66 | 0.872463 |
Target: 5'- uGGGagcguacucgGGAACCUGGCGUGGuGGagCCa -3' miRNA: 3'- cCCCa---------CCUUGGACUGCACU-CUagGGa -5' |
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28341 | 3' | -55.7 | NC_005946.1 | + | 83893 | 0.66 | 0.87097 |
Target: 5'- cGGGGUGGAugCaaGACaggGUGAGGggggccguguggCCCg -3' miRNA: 3'- -CCCCACCUugGa-CUG---CACUCUa-----------GGGa -5' |
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28341 | 3' | -55.7 | NC_005946.1 | + | 8927 | 0.67 | 0.815244 |
Target: 5'- aGGGUGGGcuGCCUGuugaGggccacGGGAUCCCc -3' miRNA: 3'- cCCCACCU--UGGACug--Ca-----CUCUAGGGa -5' |
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28341 | 3' | -55.7 | NC_005946.1 | + | 12346 | 0.68 | 0.778582 |
Target: 5'- -aGGUGGAACCcGGCGgacGAGGacaCCCUa -3' miRNA: 3'- ccCCACCUUGGaCUGCa--CUCUa--GGGA- -5' |
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28341 | 3' | -55.7 | NC_005946.1 | + | 94631 | 0.68 | 0.778582 |
Target: 5'- uGGGcaacccucccGUGGAguACCUGACGUucucgggcaaGAGgAUCCCa -3' miRNA: 3'- -CCC----------CACCU--UGGACUGCA----------CUC-UAGGGa -5' |
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28341 | 3' | -55.7 | NC_005946.1 | + | 23088 | 0.68 | 0.739744 |
Target: 5'- gGGGGUcuggaugacgcuGGGACCcggagGACccgGAGGUCCCg -3' miRNA: 3'- -CCCCA------------CCUUGGa----CUGca-CUCUAGGGa -5' |
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28341 | 3' | -55.7 | NC_005946.1 | + | 67448 | 0.69 | 0.719701 |
Target: 5'- aGGGGacugaGGAACCccuggUGGCGUaGAGGuggUCCCUg -3' miRNA: 3'- -CCCCa----CCUUGG-----ACUGCA-CUCU---AGGGA- -5' |
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28341 | 3' | -55.7 | NC_005946.1 | + | 40123 | 0.69 | 0.709559 |
Target: 5'- cGGGcauaaacagagGGGGCCUGACG-GGGA-CCCUg -3' miRNA: 3'- cCCCa----------CCUUGGACUGCaCUCUaGGGA- -5' |
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28341 | 3' | -55.7 | NC_005946.1 | + | 8164 | 1.09 | 0.00222 |
Target: 5'- uGGGGUGGAACCUGACGUGAGAUCCCUu -3' miRNA: 3'- -CCCCACCUUGGACUGCACUCUAGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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