miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28341	3'	-55.7	NC_005946.1	+	37225	0.66	0.879795
	Target:  5'- --cGUGGGGCUUGACaUGcaccAGGUCCCUg -3' miRNA:   3'- cccCACCUUGGACUGcAC----UCUAGGGA- -5'
28341	3'	-55.7	NC_005946.1	+	86956	0.66	0.872463
	Target:  5'- uGGGagcguacucgGGAACCUGGCGUGGuGGagCCa -3' miRNA:   3'- cCCCa---------CCUUGGACUGCACU-CUagGGa -5'
28341	3'	-55.7	NC_005946.1	+	83893	0.66	0.87097
	Target:  5'- cGGGGUGGAugCaaGACaggGUGAGGggggccguguggCCCg -3' miRNA:   3'- -CCCCACCUugGa-CUG---CACUCUa-----------GGGa -5'
28341	3'	-55.7	NC_005946.1	+	8927	0.67	0.815244
	Target:  5'- aGGGUGGGcuGCCUGuugaGggccacGGGAUCCCc -3' miRNA:   3'- cCCCACCU--UGGACug--Ca-----CUCUAGGGa -5'
28341	3'	-55.7	NC_005946.1	+	12346	0.68	0.778582
	Target:  5'- -aGGUGGAACCcGGCGgacGAGGacaCCCUa -3' miRNA:   3'- ccCCACCUUGGaCUGCa--CUCUa--GGGA- -5'
28341	3'	-55.7	NC_005946.1	+	94631	0.68	0.778582
	Target:  5'- uGGGcaacccucccGUGGAguACCUGACGUucucgggcaaGAGgAUCCCa -3' miRNA:   3'- -CCC----------CACCU--UGGACUGCA----------CUC-UAGGGa -5'
28341	3'	-55.7	NC_005946.1	+	23088	0.68	0.739744
	Target:  5'- gGGGGUcuggaugacgcuGGGACCcggagGACccgGAGGUCCCg -3' miRNA:   3'- -CCCCA------------CCUUGGa----CUGca-CUCUAGGGa -5'
28341	3'	-55.7	NC_005946.1	+	67448	0.69	0.719701
	Target:  5'- aGGGGacugaGGAACCccuggUGGCGUaGAGGuggUCCCUg -3' miRNA:   3'- -CCCCa----CCUUGG-----ACUGCA-CUCU---AGGGA- -5'
28341	3'	-55.7	NC_005946.1	+	40123	0.69	0.709559
	Target:  5'- cGGGcauaaacagagGGGGCCUGACG-GGGA-CCCUg -3' miRNA:   3'- cCCCa----------CCUUGGACUGCaCUCUaGGGA- -5'
28341	3'	-55.7	NC_005946.1	+	8164	1.09	0.00222
	Target:  5'- uGGGGUGGAACCUGACGUGAGAUCCCUu -3' miRNA:   3'- -CCCCACCUUGGACUGCACUCUAGGGA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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