Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28341 | 5' | -55.7 | NC_005946.1 | + | 49433 | 0.73 | 0.507089 |
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Target: 5'- uCCAGGGCCCUGgagGgGaCGGGGUCCu -3' miRNA: 3'- -GGUCCUGGGACaggUgCaGUCUCAGG- -5' |
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| 28341 | 5' | -55.7 | NC_005946.1 | + | 41410 | 0.74 | 0.465749 |
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Target: 5'- cCCGGcGGaccguccucuccguCCCUGcCCcCGUCAGGGUCCg -3' miRNA: 3'- -GGUC-CU--------------GGGACaGGuGCAGUCUCAGG- -5' |
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| 28341 | 5' | -55.7 | NC_005946.1 | + | 35992 | 0.75 | 0.396427 |
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Target: 5'- uCCAGGGCCUcggcGUCCAUGUCAG-G-CCu -3' miRNA: 3'- -GGUCCUGGGa---CAGGUGCAGUCuCaGG- -5' |
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| 28341 | 5' | -55.7 | NC_005946.1 | + | 56066 | 0.75 | 0.396427 |
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Target: 5'- uCCAGGgugagggugGCCCUGUCUACGUUcaggagggaagaGGGGUCg -3' miRNA: 3'- -GGUCC---------UGGGACAGGUGCAG------------UCUCAGg -5' |
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| 28341 | 5' | -55.7 | NC_005946.1 | + | 102295 | 0.77 | 0.295559 |
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Target: 5'- gCAGGGCCCcGcacgCCaggGCGUCAGAGUCUa -3' miRNA: 3'- gGUCCUGGGaCa---GG---UGCAGUCUCAGG- -5' |
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| 28341 | 5' | -55.7 | NC_005946.1 | + | 8129 | 1.13 | 0.001378 |
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Target: 5'- cCCAGGACCCUGUCCACGUCAGAGUCCc -3' miRNA: 3'- -GGUCCUGGGACAGGUGCAGUCUCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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