Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28342 | 3' | -55 | NC_005946.1 | + | 36960 | 0.65 | 0.906971 |
Target: 5'- cCCCUCucCUCCACCucGGAGGCaaaggCCUu -3' miRNA: 3'- -GGGAGuaGAGGUGGcuUCUCUG-----GGAc -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 69073 | 0.66 | 0.900559 |
Target: 5'- gCCCUCuuUCUCCcguCGAGGAGAUCg-- -3' miRNA: 3'- -GGGAGu-AGAGGug-GCUUCUCUGGgac -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 97894 | 0.66 | 0.900559 |
Target: 5'- aCCagGuUCUUgGCCGGGaGGACCCUGg -3' miRNA: 3'- gGGagU-AGAGgUGGCUUcUCUGGGAC- -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 23198 | 0.66 | 0.900559 |
Target: 5'- aCCUCGguucgcCUCUggagACUGAgggugucccAGGGACCCUGg -3' miRNA: 3'- gGGAGUa-----GAGG----UGGCU---------UCUCUGGGAC- -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 73228 | 0.66 | 0.88701 |
Target: 5'- cCCCUCAUCgccuUCCucCUGGAcGGGCuCCUGa -3' miRNA: 3'- -GGGAGUAG----AGGu-GGCUUcUCUG-GGAC- -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 60478 | 0.67 | 0.864931 |
Target: 5'- aCCg-GUCcCCACCGccGGAGACCCg- -3' miRNA: 3'- gGGagUAGaGGUGGCu-UCUCUGGGac -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 8801 | 0.67 | 0.864931 |
Target: 5'- cUCCUCAgaaCCACCGAcGGGuCCCg- -3' miRNA: 3'- -GGGAGUagaGGUGGCUuCUCuGGGac -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 47662 | 0.67 | 0.864931 |
Target: 5'- aCCCUCcccAUCUCCACC-AGGGGucuaCCUc -3' miRNA: 3'- -GGGAG---UAGAGGUGGcUUCUCug--GGAc -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 103920 | 0.67 | 0.857126 |
Target: 5'- aCCUUGUCUauguaCCAgUGGAGcuGACCCUGa -3' miRNA: 3'- gGGAGUAGA-----GGUgGCUUCu-CUGGGAC- -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 68745 | 0.67 | 0.857126 |
Target: 5'- gUCCUCccacgugaacGUCUCUgACCcAGGAGugCCUGg -3' miRNA: 3'- -GGGAG----------UAGAGG-UGGcUUCUCugGGAC- -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 21330 | 0.67 | 0.854742 |
Target: 5'- cCCCUCcugcuguguccagggCUUgGCCGAGGAGGCCg-- -3' miRNA: 3'- -GGGAGua-------------GAGgUGGCUUCUCUGGgac -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 32453 | 0.67 | 0.849106 |
Target: 5'- gCCUUgauaaaugcaGUCUCCugUGGAcuGGGACCCUu -3' miRNA: 3'- gGGAG----------UAGAGGugGCUU--CUCUGGGAc -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 20880 | 0.67 | 0.832457 |
Target: 5'- gCCCUggagCAgg-CCGCCGcGGuGGCCCUGa -3' miRNA: 3'- -GGGA----GUagaGGUGGCuUCuCUGGGAC- -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 35794 | 0.68 | 0.806075 |
Target: 5'- uUCCUCccGUCUCC-CUuGAG-GACCCUGa -3' miRNA: 3'- -GGGAG--UAGAGGuGGcUUCuCUGGGAC- -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 34378 | 0.69 | 0.768634 |
Target: 5'- cCCCUCucgC-CCACgguuCGggGAGACgCCUGc -3' miRNA: 3'- -GGGAGua-GaGGUG----GCuuCUCUG-GGAC- -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 74394 | 0.7 | 0.719046 |
Target: 5'- gCCUCGUCcCCGgaCGAGGcAGACCCa- -3' miRNA: 3'- gGGAGUAGaGGUg-GCUUC-UCUGGGac -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 102158 | 0.7 | 0.719046 |
Target: 5'- cUCCUCAUgagCUCguagucguCCGAGGuGACCCUGg -3' miRNA: 3'- -GGGAGUA---GAGgu------GGCUUCuCUGGGAC- -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 49292 | 0.7 | 0.705784 |
Target: 5'- gCCCcCGUCUCCACCGAccuccuguagcccgAcGGGACgaaCCUGg -3' miRNA: 3'- -GGGaGUAGAGGUGGCU--------------U-CUCUG---GGAC- -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 100948 | 0.7 | 0.688279 |
Target: 5'- aCUCUUGUCcugacagagCCGCCGGcAGAGACCCa- -3' miRNA: 3'- -GGGAGUAGa--------GGUGGCU-UCUCUGGGac -5' |
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28342 | 3' | -55 | NC_005946.1 | + | 56078 | 0.73 | 0.512496 |
Target: 5'- gCCCUCAggcUCUCCAgggUGAGGGuGGCCCUGu -3' miRNA: 3'- -GGGAGU---AGAGGUg--GCUUCU-CUGGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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