miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28342 3' -55 NC_005946.1 + 36960 0.65 0.906971
Target:  5'- cCCCUCucCUCCACCucGGAGGCaaaggCCUu -3'
miRNA:   3'- -GGGAGuaGAGGUGGcuUCUCUG-----GGAc -5'
28342 3' -55 NC_005946.1 + 23198 0.66 0.900559
Target:  5'- aCCUCGguucgcCUCUggagACUGAgggugucccAGGGACCCUGg -3'
miRNA:   3'- gGGAGUa-----GAGG----UGGCU---------UCUCUGGGAC- -5'
28342 3' -55 NC_005946.1 + 69073 0.66 0.900559
Target:  5'- gCCCUCuuUCUCCcguCGAGGAGAUCg-- -3'
miRNA:   3'- -GGGAGu-AGAGGug-GCUUCUCUGGgac -5'
28342 3' -55 NC_005946.1 + 97894 0.66 0.900559
Target:  5'- aCCagGuUCUUgGCCGGGaGGACCCUGg -3'
miRNA:   3'- gGGagU-AGAGgUGGCUUcUCUGGGAC- -5'
28342 3' -55 NC_005946.1 + 73228 0.66 0.88701
Target:  5'- cCCCUCAUCgccuUCCucCUGGAcGGGCuCCUGa -3'
miRNA:   3'- -GGGAGUAG----AGGu-GGCUUcUCUG-GGAC- -5'
28342 3' -55 NC_005946.1 + 60478 0.67 0.864931
Target:  5'- aCCg-GUCcCCACCGccGGAGACCCg- -3'
miRNA:   3'- gGGagUAGaGGUGGCu-UCUCUGGGac -5'
28342 3' -55 NC_005946.1 + 8801 0.67 0.864931
Target:  5'- cUCCUCAgaaCCACCGAcGGGuCCCg- -3'
miRNA:   3'- -GGGAGUagaGGUGGCUuCUCuGGGac -5'
28342 3' -55 NC_005946.1 + 47662 0.67 0.864931
Target:  5'- aCCCUCcccAUCUCCACC-AGGGGucuaCCUc -3'
miRNA:   3'- -GGGAG---UAGAGGUGGcUUCUCug--GGAc -5'
28342 3' -55 NC_005946.1 + 68745 0.67 0.857126
Target:  5'- gUCCUCccacgugaacGUCUCUgACCcAGGAGugCCUGg -3'
miRNA:   3'- -GGGAG----------UAGAGG-UGGcUUCUCugGGAC- -5'
28342 3' -55 NC_005946.1 + 103920 0.67 0.857126
Target:  5'- aCCUUGUCUauguaCCAgUGGAGcuGACCCUGa -3'
miRNA:   3'- gGGAGUAGA-----GGUgGCUUCu-CUGGGAC- -5'
28342 3' -55 NC_005946.1 + 21330 0.67 0.854742
Target:  5'- cCCCUCcugcuguguccagggCUUgGCCGAGGAGGCCg-- -3'
miRNA:   3'- -GGGAGua-------------GAGgUGGCUUCUCUGGgac -5'
28342 3' -55 NC_005946.1 + 32453 0.67 0.849106
Target:  5'- gCCUUgauaaaugcaGUCUCCugUGGAcuGGGACCCUu -3'
miRNA:   3'- gGGAG----------UAGAGGugGCUU--CUCUGGGAc -5'
28342 3' -55 NC_005946.1 + 20880 0.67 0.832457
Target:  5'- gCCCUggagCAgg-CCGCCGcGGuGGCCCUGa -3'
miRNA:   3'- -GGGA----GUagaGGUGGCuUCuCUGGGAC- -5'
28342 3' -55 NC_005946.1 + 35794 0.68 0.806075
Target:  5'- uUCCUCccGUCUCC-CUuGAG-GACCCUGa -3'
miRNA:   3'- -GGGAG--UAGAGGuGGcUUCuCUGGGAC- -5'
28342 3' -55 NC_005946.1 + 34378 0.69 0.768634
Target:  5'- cCCCUCucgC-CCACgguuCGggGAGACgCCUGc -3'
miRNA:   3'- -GGGAGua-GaGGUG----GCuuCUCUG-GGAC- -5'
28342 3' -55 NC_005946.1 + 74394 0.7 0.719046
Target:  5'- gCCUCGUCcCCGgaCGAGGcAGACCCa- -3'
miRNA:   3'- gGGAGUAGaGGUg-GCUUC-UCUGGGac -5'
28342 3' -55 NC_005946.1 + 102158 0.7 0.719046
Target:  5'- cUCCUCAUgagCUCguagucguCCGAGGuGACCCUGg -3'
miRNA:   3'- -GGGAGUA---GAGgu------GGCUUCuCUGGGAC- -5'
28342 3' -55 NC_005946.1 + 49292 0.7 0.705784
Target:  5'- gCCCcCGUCUCCACCGAccuccuguagcccgAcGGGACgaaCCUGg -3'
miRNA:   3'- -GGGaGUAGAGGUGGCU--------------U-CUCUG---GGAC- -5'
28342 3' -55 NC_005946.1 + 100948 0.7 0.688279
Target:  5'- aCUCUUGUCcugacagagCCGCCGGcAGAGACCCa- -3'
miRNA:   3'- -GGGAGUAGa--------GGUGGCU-UCUCUGGGac -5'
28342 3' -55 NC_005946.1 + 56078 0.73 0.512496
Target:  5'- gCCCUCAggcUCUCCAgggUGAGGGuGGCCCUGu -3'
miRNA:   3'- -GGGAGU---AGAGGUg--GCUUCU-CUGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.