Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28343 | 3' | -60.2 | NC_005946.1 | + | 37190 | 0.66 | 0.602879 |
Target: 5'- aAGC-CGUgGUaCCUGCACaCGGGGucggACGCc -3' miRNA: 3'- -UCGuGCGgCA-GGACGUG-GUCCC----UGUG- -5' |
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28343 | 3' | -60.2 | NC_005946.1 | + | 11084 | 0.66 | 0.602879 |
Target: 5'- uGGC-CGCCG-CCaGCcCCAGGGucucguACACg -3' miRNA: 3'- -UCGuGCGGCaGGaCGuGGUCCC------UGUG- -5' |
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28343 | 3' | -60.2 | NC_005946.1 | + | 72743 | 0.66 | 0.592639 |
Target: 5'- aGGCugGCGUgGUCCggcGCugCGGGGucCGCg -3' miRNA: 3'- -UCG--UGCGgCAGGa--CGugGUCCCu-GUG- -5' |
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28343 | 3' | -60.2 | NC_005946.1 | + | 14910 | 0.66 | 0.592639 |
Target: 5'- cGUAgGCCGUCUUGUggcccGCUAuGGGAgACg -3' miRNA: 3'- uCGUgCGGCAGGACG-----UGGU-CCCUgUG- -5' |
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28343 | 3' | -60.2 | NC_005946.1 | + | 88337 | 0.67 | 0.576321 |
Target: 5'- aGGCG-GCCGggcaggcacuggaccUCCUcagGCGCgAGGGGCACu -3' miRNA: 3'- -UCGUgCGGC---------------AGGA---CGUGgUCCCUGUG- -5' |
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28343 | 3' | -60.2 | NC_005946.1 | + | 47146 | 0.7 | 0.384647 |
Target: 5'- uGCAgGCCGUCCUuUACCcuGGugACa -3' miRNA: 3'- uCGUgCGGCAGGAcGUGGucCCugUG- -5' |
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28343 | 3' | -60.2 | NC_005946.1 | + | 94982 | 0.7 | 0.368186 |
Target: 5'- aGGCACGCCaacguaGUCCUG----AGGGACACa -3' miRNA: 3'- -UCGUGCGG------CAGGACguggUCCCUGUG- -5' |
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28343 | 3' | -60.2 | NC_005946.1 | + | 2651 | 0.71 | 0.344415 |
Target: 5'- uGCuACGCCGggggCUGCAgcgccuucacacCCAGGGGCACc -3' miRNA: 3'- uCG-UGCGGCag--GACGU------------GGUCCCUGUG- -5' |
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28343 | 3' | -60.2 | NC_005946.1 | + | 63981 | 0.72 | 0.307298 |
Target: 5'- cGCACGCgG-CCUuCAUgAGGGACGCg -3' miRNA: 3'- uCGUGCGgCaGGAcGUGgUCCCUGUG- -5' |
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28343 | 3' | -60.2 | NC_005946.1 | + | 47304 | 0.75 | 0.18005 |
Target: 5'- cGUACGCCGUCCUGUcuCCAaacucGGGCACa -3' miRNA: 3'- uCGUGCGGCAGGACGu-GGUc----CCUGUG- -5' |
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28343 | 3' | -60.2 | NC_005946.1 | + | 95119 | 0.76 | 0.16265 |
Target: 5'- uGCAgGCgGUCCUGaggaucgcuccCACCAGGGACAa -3' miRNA: 3'- uCGUgCGgCAGGAC-----------GUGGUCCCUGUg -5' |
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28343 | 3' | -60.2 | NC_005946.1 | + | 9164 | 1.08 | 0.000741 |
Target: 5'- cAGCACGCCGUCCUGCACCAGGGACACu -3' miRNA: 3'- -UCGUGCGGCAGGACGUGGUCCCUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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