miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28344 3' -56.9 NC_005946.1 + 14914 0.66 0.814258
Target:  5'- gUCACGUaggccgucuuguggCCCGcuaugggagacggaGCCCUCGCcGCCGa- -3'
miRNA:   3'- gAGUGUA--------------GGGU--------------UGGGAGCGuCGGCac -5'
28344 3' -56.9 NC_005946.1 + 35771 0.66 0.810691
Target:  5'- -cCugAUCCUGGCCCUCGUAuaguccCCGUa -3'
miRNA:   3'- gaGugUAGGGUUGGGAGCGUc-----GGCAc -5'
28344 3' -56.9 NC_005946.1 + 42229 0.66 0.801658
Target:  5'- aCUC-CAUCCgGACCCUU-CAcGCCGUc -3'
miRNA:   3'- -GAGuGUAGGgUUGGGAGcGU-CGGCAc -5'
28344 3' -56.9 NC_005946.1 + 79079 0.66 0.764019
Target:  5'- --aACAcUCCGACCCUgGCGGCCu-- -3'
miRNA:   3'- gagUGUaGGGUUGGGAgCGUCGGcac -5'
28344 3' -56.9 NC_005946.1 + 58424 0.67 0.754281
Target:  5'- --gACGUCauGGCCCUCGCcaaAGCCGUa -3'
miRNA:   3'- gagUGUAGggUUGGGAGCG---UCGGCAc -5'
28344 3' -56.9 NC_005946.1 + 47530 0.67 0.754281
Target:  5'- gUCACGUCCCcgGGCaCCacCGCAGCCc-- -3'
miRNA:   3'- gAGUGUAGGG--UUG-GGa-GCGUCGGcac -5'
28344 3' -56.9 NC_005946.1 + 57065 0.67 0.724429
Target:  5'- cCUCACAuagUCCgAACCCaaaGCGGCCu-- -3'
miRNA:   3'- -GAGUGU---AGGgUUGGGag-CGUCGGcac -5'
28344 3' -56.9 NC_005946.1 + 67393 0.67 0.713283
Target:  5'- aCUCACAUCCCuaaaguccugcagGGCCCUgGUcacGGCC-UGa -3'
miRNA:   3'- -GAGUGUAGGG-------------UUGGGAgCG---UCGGcAC- -5'
28344 3' -56.9 NC_005946.1 + 35937 0.69 0.62099
Target:  5'- -cCGCcgCCagGGCCCUCGCAGCgGg- -3'
miRNA:   3'- gaGUGuaGGg-UUGGGAGCGUCGgCac -5'
28344 3' -56.9 NC_005946.1 + 11346 0.69 0.610551
Target:  5'- uCUCACGggcagaCCCGccgccACCCUCGC-GCCGg- -3'
miRNA:   3'- -GAGUGUa-----GGGU-----UGGGAGCGuCGGCac -5'
28344 3' -56.9 NC_005946.1 + 9266 1.09 0.001579
Target:  5'- cCUCACAUCCCAACCCUCGCAGCCGUGa -3'
miRNA:   3'- -GAGUGUAGGGUUGGGAGCGUCGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.