miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28344 5' -57.7 NC_005946.1 + 94745 0.66 0.791792
Target:  5'- uGGCGGGUCacaGCAucaagGGCaccgUCCUCccaGAGGGu -3'
miRNA:   3'- -CCGUCCAG---CGU-----UCG----AGGAGuc-CUCCC- -5'
28344 5' -57.7 NC_005946.1 + 13211 0.66 0.78255
Target:  5'- gGGCGGGUucccaCGaCAGGCUCa--AGGccAGGGg -3'
miRNA:   3'- -CCGUCCA-----GC-GUUCGAGgagUCC--UCCC- -5'
28344 5' -57.7 NC_005946.1 + 13152 0.66 0.77317
Target:  5'- aGGCuGGUgGCu-GUUCC-CAGGggcAGGGa -3'
miRNA:   3'- -CCGuCCAgCGuuCGAGGaGUCC---UCCC- -5'
28344 5' -57.7 NC_005946.1 + 23636 0.66 0.753066
Target:  5'- uGCaAGaGUCGCAGGCcCCUgccccggCGGuGAGGGg -3'
miRNA:   3'- cCG-UC-CAGCGUUCGaGGA-------GUC-CUCCC- -5'
28344 5' -57.7 NC_005946.1 + 74763 0.67 0.734463
Target:  5'- aGCAGGUUGUAAGCggCgUaCGGGuuGGGu -3'
miRNA:   3'- cCGUCCAGCGUUCGa-GgA-GUCCu-CCC- -5'
28344 5' -57.7 NC_005946.1 + 88337 0.67 0.714529
Target:  5'- aGGCGGccggGCAGGCacuggaccUCCUCAGGcgcgAGGGg -3'
miRNA:   3'- -CCGUCcag-CGUUCG--------AGGAGUCC----UCCC- -5'
28344 5' -57.7 NC_005946.1 + 71172 0.68 0.622341
Target:  5'- aGGCAGcccGUgGCGGGCaggUCCa-GGGAGGGg -3'
miRNA:   3'- -CCGUC---CAgCGUUCG---AGGagUCCUCCC- -5'
28344 5' -57.7 NC_005946.1 + 36291 0.69 0.575062
Target:  5'- aGGUAGGUCuggaaggugugGUggGCUCCggcggcgguggcgggUCuGGGGGGa -3'
miRNA:   3'- -CCGUCCAG-----------CGuuCGAGG---------------AGuCCUCCC- -5'
28344 5' -57.7 NC_005946.1 + 12737 0.69 0.570983
Target:  5'- aGGCAGGcuggagcugUCuGCucccuacGGUUCCUCggAGGAGGGg -3'
miRNA:   3'- -CCGUCC---------AG-CGu------UCGAGGAG--UCCUCCC- -5'
28344 5' -57.7 NC_005946.1 + 56281 0.7 0.550698
Target:  5'- cGGCcucugccgccGGGUCcaugGCAAGCagaugCCugaUCAGGAGGGa -3'
miRNA:   3'- -CCG----------UCCAG----CGUUCGa----GG---AGUCCUCCC- -5'
28344 5' -57.7 NC_005946.1 + 54949 0.71 0.472259
Target:  5'- cGGCAGca-GCAAGCgcagCCUgAGGAGGc -3'
miRNA:   3'- -CCGUCcagCGUUCGa---GGAgUCCUCCc -5'
28344 5' -57.7 NC_005946.1 + 9229 1.11 0.000923
Target:  5'- aGGCAGGUCGCAAGCUCCUCAGGAGGGc -3'
miRNA:   3'- -CCGUCCAGCGUUCGAGGAGUCCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.