Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28344 | 5' | -57.7 | NC_005946.1 | + | 94745 | 0.66 | 0.791792 |
Target: 5'- uGGCGGGUCacaGCAucaagGGCaccgUCCUCccaGAGGGu -3' miRNA: 3'- -CCGUCCAG---CGU-----UCG----AGGAGuc-CUCCC- -5' |
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28344 | 5' | -57.7 | NC_005946.1 | + | 13211 | 0.66 | 0.78255 |
Target: 5'- gGGCGGGUucccaCGaCAGGCUCa--AGGccAGGGg -3' miRNA: 3'- -CCGUCCA-----GC-GUUCGAGgagUCC--UCCC- -5' |
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28344 | 5' | -57.7 | NC_005946.1 | + | 13152 | 0.66 | 0.77317 |
Target: 5'- aGGCuGGUgGCu-GUUCC-CAGGggcAGGGa -3' miRNA: 3'- -CCGuCCAgCGuuCGAGGaGUCC---UCCC- -5' |
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28344 | 5' | -57.7 | NC_005946.1 | + | 23636 | 0.66 | 0.753066 |
Target: 5'- uGCaAGaGUCGCAGGCcCCUgccccggCGGuGAGGGg -3' miRNA: 3'- cCG-UC-CAGCGUUCGaGGA-------GUC-CUCCC- -5' |
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28344 | 5' | -57.7 | NC_005946.1 | + | 74763 | 0.67 | 0.734463 |
Target: 5'- aGCAGGUUGUAAGCggCgUaCGGGuuGGGu -3' miRNA: 3'- cCGUCCAGCGUUCGa-GgA-GUCCu-CCC- -5' |
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28344 | 5' | -57.7 | NC_005946.1 | + | 88337 | 0.67 | 0.714529 |
Target: 5'- aGGCGGccggGCAGGCacuggaccUCCUCAGGcgcgAGGGg -3' miRNA: 3'- -CCGUCcag-CGUUCG--------AGGAGUCC----UCCC- -5' |
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28344 | 5' | -57.7 | NC_005946.1 | + | 71172 | 0.68 | 0.622341 |
Target: 5'- aGGCAGcccGUgGCGGGCaggUCCa-GGGAGGGg -3' miRNA: 3'- -CCGUC---CAgCGUUCG---AGGagUCCUCCC- -5' |
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28344 | 5' | -57.7 | NC_005946.1 | + | 36291 | 0.69 | 0.575062 |
Target: 5'- aGGUAGGUCuggaaggugugGUggGCUCCggcggcgguggcgggUCuGGGGGGa -3' miRNA: 3'- -CCGUCCAG-----------CGuuCGAGG---------------AGuCCUCCC- -5' |
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28344 | 5' | -57.7 | NC_005946.1 | + | 12737 | 0.69 | 0.570983 |
Target: 5'- aGGCAGGcuggagcugUCuGCucccuacGGUUCCUCggAGGAGGGg -3' miRNA: 3'- -CCGUCC---------AG-CGu------UCGAGGAG--UCCUCCC- -5' |
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28344 | 5' | -57.7 | NC_005946.1 | + | 56281 | 0.7 | 0.550698 |
Target: 5'- cGGCcucugccgccGGGUCcaugGCAAGCagaugCCugaUCAGGAGGGa -3' miRNA: 3'- -CCG----------UCCAG----CGUUCGa----GG---AGUCCUCCC- -5' |
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28344 | 5' | -57.7 | NC_005946.1 | + | 54949 | 0.71 | 0.472259 |
Target: 5'- cGGCAGca-GCAAGCgcagCCUgAGGAGGc -3' miRNA: 3'- -CCGUCcagCGUUCGa---GGAgUCCUCCc -5' |
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28344 | 5' | -57.7 | NC_005946.1 | + | 9229 | 1.11 | 0.000923 |
Target: 5'- aGGCAGGUCGCAAGCUCCUCAGGAGGGc -3' miRNA: 3'- -CCGUCCAGCGUUCGAGGAGUCCUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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