Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28345 | 3' | -55.9 | NC_005946.1 | + | 48723 | 0.66 | 0.842054 |
Target: 5'- gGGACguugggGUCCcccaucuCCCUCCUCCACc -3' miRNA: 3'- -UCUGaga---UAGGacgu---GGGAGGAGGUG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 83418 | 0.66 | 0.842054 |
Target: 5'- cGugUCUccCCUGCugCUgcaucccguUCCUCUGCa -3' miRNA: 3'- uCugAGAuaGGACGugGG---------AGGAGGUG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 51693 | 0.66 | 0.842054 |
Target: 5'- cGACUCUGUCUUGguCUa--CUCCAa -3' miRNA: 3'- uCUGAGAUAGGACguGGgagGAGGUg -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 101936 | 0.66 | 0.833555 |
Target: 5'- aGGGC-CUGcuUCCUGCA-CCUCCUgUGCu -3' miRNA: 3'- -UCUGaGAU--AGGACGUgGGAGGAgGUG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 11041 | 0.66 | 0.824858 |
Target: 5'- ---gUCUGUCCU-CACCCUCUcCCAg -3' miRNA: 3'- ucugAGAUAGGAcGUGGGAGGaGGUg -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 66831 | 0.66 | 0.797678 |
Target: 5'- gGGACUgcgcccaaggCUGUCgaGUGCgaCCUCCUCUACg -3' miRNA: 3'- -UCUGA----------GAUAGgaCGUG--GGAGGAGGUG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 1948 | 0.67 | 0.788284 |
Target: 5'- uGACUUU-UCCaaGUAcguCCCUCCUCCGCc -3' miRNA: 3'- uCUGAGAuAGGa-CGU---GGGAGGAGGUG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 5946 | 0.67 | 0.77874 |
Target: 5'- -aGCUUaugccgguuUCCUGUauGCCUUCCUCCACc -3' miRNA: 3'- ucUGAGau-------AGGACG--UGGGAGGAGGUG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 94112 | 0.67 | 0.749302 |
Target: 5'- uGGCUCUGUCCUccaggaucccaGCuCCCgccggCCUCCu- -3' miRNA: 3'- uCUGAGAUAGGA-----------CGuGGGa----GGAGGug -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 89264 | 0.69 | 0.677226 |
Target: 5'- uGcCUCUGcagggCgUGCACCCUCCUgcucCCGCa -3' miRNA: 3'- uCuGAGAUa----GgACGUGGGAGGA----GGUG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 47098 | 0.7 | 0.603174 |
Target: 5'- uGGACgaggCUAUCCUGCACgg-CCgCCGCa -3' miRNA: 3'- -UCUGa---GAUAGGACGUGggaGGaGGUG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 98196 | 0.7 | 0.57161 |
Target: 5'- uGGACUggGgcggCCUGCACCUg-CUCCACa -3' miRNA: 3'- -UCUGAgaUa---GGACGUGGGagGAGGUG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 4428 | 0.74 | 0.396299 |
Target: 5'- uGGACaggGUCCUcGCcauaguccacagGCCCUCCUCCGCg -3' miRNA: 3'- -UCUGagaUAGGA-CG------------UGGGAGGAGGUG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 36656 | 0.75 | 0.330202 |
Target: 5'- cGGACUCUGUCCaccCAUCCUCCUCgAa -3' miRNA: 3'- -UCUGAGAUAGGac-GUGGGAGGAGgUg -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 61891 | 0.76 | 0.272595 |
Target: 5'- cGGACUCUAgggucuuuacaUCCgGCAcCCCUCCUCC-Cg -3' miRNA: 3'- -UCUGAGAU-----------AGGaCGU-GGGAGGAGGuG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 26244 | 0.78 | 0.206911 |
Target: 5'- cGGACUCUAUCCUGUcugccaccGCCCUCCaaaacucucCCACc -3' miRNA: 3'- -UCUGAGAUAGGACG--------UGGGAGGa--------GGUG- -5' |
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28345 | 3' | -55.9 | NC_005946.1 | + | 9363 | 1.1 | 0.001412 |
Target: 5'- cAGACUCUAUCCUGCACCCUCCUCCACa -3' miRNA: 3'- -UCUGAGAUAGGACGUGGGAGGAGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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