Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28345 | 5' | -57.8 | NC_005946.1 | + | 9325 | 1.11 | 0.001067 |
Target: 5'- aGGGUGGACGGGAGGACAGAGGACAGAa -3' miRNA: 3'- -CCCACCUGCCCUCCUGUCUCCUGUCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 35265 | 0.77 | 0.228933 |
Target: 5'- uGGGUaGGACGGGcauGGGC-GAGGACGGc -3' miRNA: 3'- -CCCA-CCUGCCCu--CCUGuCUCCUGUCu -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 73325 | 0.72 | 0.424259 |
Target: 5'- gGGGUGGAUGGucaaGAGGAUGGcGGACGc- -3' miRNA: 3'- -CCCACCUGCC----CUCCUGUCuCCUGUcu -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 34903 | 0.72 | 0.430492 |
Target: 5'- cGGGaGGACGGGaAGGgaGCAGgaccaccgaucccaGGGACAGGu -3' miRNA: 3'- -CCCaCCUGCCC-UCC--UGUC--------------UCCUGUCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 36251 | 0.71 | 0.469919 |
Target: 5'- cGGGUcuGGG-GGGAGcGGCcuuGAGGACGGAa -3' miRNA: 3'- -CCCA--CCUgCCCUC-CUGu--CUCCUGUCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 13317 | 0.71 | 0.508181 |
Target: 5'- aGGGUGGugGccGAGGGCcugacguuuaaGGAGGugAGGc -3' miRNA: 3'- -CCCACCugCc-CUCCUG-----------UCUCCugUCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 103060 | 0.7 | 0.517955 |
Target: 5'- aGGGUGGAgUGGGAGc-CAGGGGGCu-- -3' miRNA: 3'- -CCCACCU-GCCCUCcuGUCUCCUGucu -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 72124 | 0.7 | 0.524841 |
Target: 5'- cGGUGGuggccaucaugacgGCGGGAGGcuucaaccaAGAGGACAGc -3' miRNA: 3'- cCCACC--------------UGCCCUCCug-------UCUCCUGUCu -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 25775 | 0.7 | 0.527803 |
Target: 5'- uGGUGGACGacGAGGACGacGAGGACcaaucGGAc -3' miRNA: 3'- cCCACCUGCc-CUCCUGU--CUCCUG-----UCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 12769 | 0.7 | 0.537719 |
Target: 5'- uGGGgGGACGGcGcugugcucAGGGCGGAGGgagGCAGGc -3' miRNA: 3'- -CCCaCCUGCC-C--------UCCUGUCUCC---UGUCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 78047 | 0.7 | 0.564794 |
Target: 5'- aGGGUcGuACccaaucgccaccguGGGAGGGCAGAGGGuCGGAu -3' miRNA: 3'- -CCCAcC-UG--------------CCCUCCUGUCUCCU-GUCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 36428 | 0.7 | 0.567826 |
Target: 5'- aGGGaggagGGACGGaaGGGGcACGGAGGgacGCGGAa -3' miRNA: 3'- -CCCa----CCUGCC--CUCC-UGUCUCC---UGUCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 61636 | 0.7 | 0.567826 |
Target: 5'- uGG-GGGCcuuuuucggcaGGGAGGACAGcacgguGGACAGGg -3' miRNA: 3'- cCCaCCUG-----------CCCUCCUGUCu-----CCUGUCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 35658 | 0.69 | 0.588135 |
Target: 5'- gGGGguuggGGACGacGAGGAUAGuguccaGGGACAGGu -3' miRNA: 3'- -CCCa----CCUGCc-CUCCUGUC------UCCUGUCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 12177 | 0.69 | 0.589154 |
Target: 5'- cGGUGGGCaGGAGGugcguggacugggauCAGAGGACc-- -3' miRNA: 3'- cCCACCUGcCCUCCu--------------GUCUCCUGucu -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 79454 | 0.69 | 0.59834 |
Target: 5'- gGGGUGGGcCGGGuGGACGcuccuGGGCuGGAc -3' miRNA: 3'- -CCCACCU-GCCCuCCUGUcu---CCUG-UCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 102997 | 0.69 | 0.629078 |
Target: 5'- aGGGaGGGCcGGGA-GACAcGGGGACGGu -3' miRNA: 3'- -CCCaCCUG-CCCUcCUGU-CUCCUGUCu -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 49413 | 0.68 | 0.643442 |
Target: 5'- gGGGUccucguaGACGGGAGGACcgccgucggaccaagAGGGGuCGGGg -3' miRNA: 3'- -CCCAc------CUGCCCUCCUG---------------UCUCCuGUCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 4289 | 0.68 | 0.680242 |
Target: 5'- aGGGUGGGUGuGGaAGGACAcGAGGccguCGGGg -3' miRNA: 3'- -CCCACCUGC-CC-UCCUGU-CUCCu---GUCU- -5' |
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28345 | 5' | -57.8 | NC_005946.1 | + | 25352 | 0.67 | 0.69039 |
Target: 5'- uGG-GGAagcuccUGGGAGGACAGAuGGACu-- -3' miRNA: 3'- cCCaCCU------GCCCUCCUGUCU-CCUGucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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