miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28346 5' -54.4 NC_005946.1 + 2282 0.66 0.903342
Target:  5'- gACCCCGCCG---GGGG-CUGgUGcAGAa -3'
miRNA:   3'- -UGGGGUGGCuuuUCCCaGAC-AC-UCUg -5'
28346 5' -54.4 NC_005946.1 + 14421 0.66 0.896006
Target:  5'- gGCCgagagggCCAagGAAAAGGGUCUGaccaGAGGCu -3'
miRNA:   3'- -UGG-------GGUggCUUUUCCCAGACa---CUCUG- -5'
28346 5' -54.4 NC_005946.1 + 22462 0.66 0.88978
Target:  5'- gUCCUGCCGGuccuAGGGUUccugGUGGGAUc -3'
miRNA:   3'- uGGGGUGGCUuu--UCCCAGa---CACUCUG- -5'
28346 5' -54.4 NC_005946.1 + 61732 0.66 0.88263
Target:  5'- cCCCCGugUCGuguAGGGUCcucuugucUGUGAGGCc -3'
miRNA:   3'- uGGGGU--GGCuuuUCCCAG--------ACACUCUG- -5'
28346 5' -54.4 NC_005946.1 + 7760 0.67 0.870692
Target:  5'- cCCCCGCCGAucccauccuGGGGUCguaaacgGaccccgucucugccuUGAGGCa -3'
miRNA:   3'- uGGGGUGGCUuu-------UCCCAGa------C---------------ACUCUG- -5'
28346 5' -54.4 NC_005946.1 + 48644 0.67 0.867614
Target:  5'- cCCCCAUCGcAGAAGGGUCca--AGGCc -3'
miRNA:   3'- uGGGGUGGC-UUUUCCCAGacacUCUG- -5'
28346 5' -54.4 NC_005946.1 + 10505 0.67 0.858962
Target:  5'- cCCCCGCCuuguGGAAggugucuAGGGUCUGcUGGGuCu -3'
miRNA:   3'- uGGGGUGG----CUUU-------UCCCAGAC-ACUCuG- -5'
28346 5' -54.4 NC_005946.1 + 82541 0.67 0.851684
Target:  5'- cGCCUCGuCCGGggagaggcuGGAGGuGUCUGcggGAGGCa -3'
miRNA:   3'- -UGGGGU-GGCU---------UUUCC-CAGACa--CUCUG- -5'
28346 5' -54.4 NC_005946.1 + 23113 0.67 0.851684
Target:  5'- cGCCCCuggcgccucaaaGCUGuuuGGGGGUCUG-GAuGACg -3'
miRNA:   3'- -UGGGG------------UGGCuu-UUCCCAGACaCU-CUG- -5'
28346 5' -54.4 NC_005946.1 + 63812 0.68 0.789591
Target:  5'- gGCCCUcUUGAcguAGGGUCUG-GGGACc -3'
miRNA:   3'- -UGGGGuGGCUuu-UCCCAGACaCUCUG- -5'
28346 5' -54.4 NC_005946.1 + 17798 0.68 0.786739
Target:  5'- uCCCCGCUG-GAGGGGauguaaaugcuuacUCUGUGuGGCc -3'
miRNA:   3'- uGGGGUGGCuUUUCCC--------------AGACACuCUG- -5'
28346 5' -54.4 NC_005946.1 + 52320 0.69 0.77033
Target:  5'- gGCCCCGCCaccuucAAGGGUaUGgaggGAGACc -3'
miRNA:   3'- -UGGGGUGGcuu---UUCCCAgACa---CUCUG- -5'
28346 5' -54.4 NC_005946.1 + 44327 0.69 0.760496
Target:  5'- gACCCUugCGcuuGAGGG-CUGggugGAGGCc -3'
miRNA:   3'- -UGGGGugGCuu-UUCCCaGACa---CUCUG- -5'
28346 5' -54.4 NC_005946.1 + 62091 0.77 0.314716
Target:  5'- gACCUCACCaGAAAGGGGUcCUGaagGAGGCc -3'
miRNA:   3'- -UGGGGUGG-CUUUUCCCA-GACa--CUCUG- -5'
28346 5' -54.4 NC_005946.1 + 9520 1.1 0.00226
Target:  5'- uACCCCACCGAAAAGGGUCUGUGAGACa -3'
miRNA:   3'- -UGGGGUGGCUUUUCCCAGACACUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.