Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28346 | 5' | -54.4 | NC_005946.1 | + | 2282 | 0.66 | 0.903342 |
Target: 5'- gACCCCGCCG---GGGG-CUGgUGcAGAa -3' miRNA: 3'- -UGGGGUGGCuuuUCCCaGAC-AC-UCUg -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 14421 | 0.66 | 0.896006 |
Target: 5'- gGCCgagagggCCAagGAAAAGGGUCUGaccaGAGGCu -3' miRNA: 3'- -UGG-------GGUggCUUUUCCCAGACa---CUCUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 22462 | 0.66 | 0.88978 |
Target: 5'- gUCCUGCCGGuccuAGGGUUccugGUGGGAUc -3' miRNA: 3'- uGGGGUGGCUuu--UCCCAGa---CACUCUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 61732 | 0.66 | 0.88263 |
Target: 5'- cCCCCGugUCGuguAGGGUCcucuugucUGUGAGGCc -3' miRNA: 3'- uGGGGU--GGCuuuUCCCAG--------ACACUCUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 7760 | 0.67 | 0.870692 |
Target: 5'- cCCCCGCCGAucccauccuGGGGUCguaaacgGaccccgucucugccuUGAGGCa -3' miRNA: 3'- uGGGGUGGCUuu-------UCCCAGa------C---------------ACUCUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 48644 | 0.67 | 0.867614 |
Target: 5'- cCCCCAUCGcAGAAGGGUCca--AGGCc -3' miRNA: 3'- uGGGGUGGC-UUUUCCCAGacacUCUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 10505 | 0.67 | 0.858962 |
Target: 5'- cCCCCGCCuuguGGAAggugucuAGGGUCUGcUGGGuCu -3' miRNA: 3'- uGGGGUGG----CUUU-------UCCCAGAC-ACUCuG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 23113 | 0.67 | 0.851684 |
Target: 5'- cGCCCCuggcgccucaaaGCUGuuuGGGGGUCUG-GAuGACg -3' miRNA: 3'- -UGGGG------------UGGCuu-UUCCCAGACaCU-CUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 82541 | 0.67 | 0.851684 |
Target: 5'- cGCCUCGuCCGGggagaggcuGGAGGuGUCUGcggGAGGCa -3' miRNA: 3'- -UGGGGU-GGCU---------UUUCC-CAGACa--CUCUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 63812 | 0.68 | 0.789591 |
Target: 5'- gGCCCUcUUGAcguAGGGUCUG-GGGACc -3' miRNA: 3'- -UGGGGuGGCUuu-UCCCAGACaCUCUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 17798 | 0.68 | 0.786739 |
Target: 5'- uCCCCGCUG-GAGGGGauguaaaugcuuacUCUGUGuGGCc -3' miRNA: 3'- uGGGGUGGCuUUUCCC--------------AGACACuCUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 52320 | 0.69 | 0.77033 |
Target: 5'- gGCCCCGCCaccuucAAGGGUaUGgaggGAGACc -3' miRNA: 3'- -UGGGGUGGcuu---UUCCCAgACa---CUCUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 44327 | 0.69 | 0.760496 |
Target: 5'- gACCCUugCGcuuGAGGG-CUGggugGAGGCc -3' miRNA: 3'- -UGGGGugGCuu-UUCCCaGACa---CUCUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 62091 | 0.77 | 0.314716 |
Target: 5'- gACCUCACCaGAAAGGGGUcCUGaagGAGGCc -3' miRNA: 3'- -UGGGGUGG-CUUUUCCCA-GACa--CUCUG- -5' |
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28346 | 5' | -54.4 | NC_005946.1 | + | 9520 | 1.1 | 0.00226 |
Target: 5'- uACCCCACCGAAAAGGGUCUGUGAGACa -3' miRNA: 3'- -UGGGGUGGCUUUUCCCAGACACUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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