Results 1 - 20 of 22 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28347 | 5' | -58 | NC_005946.1 | + | 20782 | 0.66 | 0.77968 |
Target: 5'- gCUCCugGAGCaggCCUC-GGCCgUGuCCGg -3' miRNA: 3'- gGAGGugCUCG---GGAGaCUGG-ACuGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 13916 | 0.66 | 0.770286 |
Target: 5'- aCCUCCuCaAGCCCgacGAgCUGGCCGa -3' miRNA: 3'- -GGAGGuGcUCGGGagaCUgGACUGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 22405 | 0.66 | 0.760767 |
Target: 5'- gCCUCCGCG-G-CCUCUG-CCggUGACUg -3' miRNA: 3'- -GGAGGUGCuCgGGAGACuGG--ACUGGu -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 47231 | 0.66 | 0.738453 |
Target: 5'- aCCgUCCACGGGCuugacggaccucagCCUCUuuaGCCUGACg- -3' miRNA: 3'- -GG-AGGUGCUCG--------------GGAGAc--UGGACUGgu -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 22092 | 0.66 | 0.731557 |
Target: 5'- cCCUgaaCACGGGCCCUCccccuugaUGGuCCUG-CCGg -3' miRNA: 3'- -GGAg--GUGCUCGGGAG--------ACU-GGACuGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 66864 | 0.67 | 0.721634 |
Target: 5'- --gCCACGGugguGaCCUUCaggGACCUGACCAg -3' miRNA: 3'- ggaGGUGCU----C-GGGAGa--CUGGACUGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 104377 | 0.67 | 0.721634 |
Target: 5'- gCgUCCGCGgcGGCCCUCagGGCC--ACCAu -3' miRNA: 3'- -GgAGGUGC--UCGGGAGa-CUGGacUGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 35590 | 0.67 | 0.701563 |
Target: 5'- gCUUCCAgcaGAGCCUgagaGACCUGACaCAg -3' miRNA: 3'- -GGAGGUg--CUCGGGaga-CUGGACUG-GU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 74998 | 0.67 | 0.701563 |
Target: 5'- gCUCCAgCGcuGCCC-CUGAUgaGGCCAg -3' miRNA: 3'- gGAGGU-GCu-CGGGaGACUGgaCUGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 38745 | 0.68 | 0.660783 |
Target: 5'- aCCUCCugGgugaAGCCaCUCUGGCUUcagaGACUc -3' miRNA: 3'- -GGAGGugC----UCGG-GAGACUGGA----CUGGu -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 102105 | 0.68 | 0.660783 |
Target: 5'- -gUCCACGuAGUCCgUCagGACCUGcACCGu -3' miRNA: 3'- ggAGGUGC-UCGGG-AGa-CUGGAC-UGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 8540 | 0.68 | 0.660783 |
Target: 5'- aCCUCCAgGGuGCCgUCUggacccaccaccGACCUG-CCAg -3' miRNA: 3'- -GGAGGUgCU-CGGgAGA------------CUGGACuGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 81719 | 0.68 | 0.650508 |
Target: 5'- aCCUaCCugGAcGCCCUacc-CCUGGCCGc -3' miRNA: 3'- -GGA-GGugCU-CGGGAgacuGGACUGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 36087 | 0.68 | 0.650508 |
Target: 5'- cCCUCCuCGAGCUuaaacuCUCUcACCaGACCAu -3' miRNA: 3'- -GGAGGuGCUCGG------GAGAcUGGaCUGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 3352 | 0.68 | 0.609341 |
Target: 5'- gCCUCCAgCaGGCCCUCaUGGCCacaGCCGu -3' miRNA: 3'- -GGAGGU-GcUCGGGAG-ACUGGac-UGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 52334 | 0.69 | 0.58883 |
Target: 5'- --gCCugGAGCUCUUUGGCCccGCCAc -3' miRNA: 3'- ggaGGugCUCGGGAGACUGGacUGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 22281 | 0.7 | 0.548244 |
Target: 5'- cCCUgaaCACGGGCCCUCcccucuugaugGGCCUG-CCGg -3' miRNA: 3'- -GGAg--GUGCUCGGGAGa----------CUGGACuGGU- -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 42299 | 0.71 | 0.470167 |
Target: 5'- aCC-CCugGGGCCCUUUGgACCcucagGACCc -3' miRNA: 3'- -GGaGGugCUCGGGAGAC-UGGa----CUGGu -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 40050 | 0.71 | 0.451524 |
Target: 5'- -aUCCGCGGaucccGCUCUCUGAaCCUGACUu -3' miRNA: 3'- ggAGGUGCU-----CGGGAGACU-GGACUGGu -5' |
|||||||
28347 | 5' | -58 | NC_005946.1 | + | 26948 | 0.73 | 0.364902 |
Target: 5'- gUUCCagGCGGGCuuCCUCUG-CCUGGCCAc -3' miRNA: 3'- gGAGG--UGCUCG--GGAGACuGGACUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home