Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28348 | 3' | -53.5 | NC_005946.1 | + | 63963 | 0.66 | 0.945821 |
Target: 5'- -gGGACGCgGGGG-GUaucucugacccgucuGCGAUGGCCc -3' miRNA: 3'- cgUUUGCGgUUCCaCA---------------UGCUGCCGGc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 7365 | 0.66 | 0.943984 |
Target: 5'- cGCGGAUGCgagGAGGUGcACGcCGGCa- -3' miRNA: 3'- -CGUUUGCGg--UUCCACaUGCuGCCGgc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 15934 | 0.66 | 0.943984 |
Target: 5'- cGCAAGucUGCCGAGGcgGU-CG-UGGCCa -3' miRNA: 3'- -CGUUU--GCGGUUCCa-CAuGCuGCCGGc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 29792 | 0.66 | 0.934196 |
Target: 5'- cGCAGAUGUaCGGGGUGUAgGuACccuugGGCCa -3' miRNA: 3'- -CGUUUGCG-GUUCCACAUgC-UG-----CCGGc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 12884 | 0.66 | 0.92892 |
Target: 5'- cGCGGAgGCCGuggcucAGGUGagGCugGACGGCgGa -3' miRNA: 3'- -CGUUUgCGGU------UCCACa-UG--CUGCCGgC- -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 63543 | 0.66 | 0.923389 |
Target: 5'- aGCAgGACcCCAGGGUGaggguucucACGuCGGCCGc -3' miRNA: 3'- -CGU-UUGcGGUUCCACa--------UGCuGCCGGC- -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 13645 | 0.67 | 0.917603 |
Target: 5'- uGCGGAgGCCAggaacccgagucAGGUcaggAgGAUGGCCGg -3' miRNA: 3'- -CGUUUgCGGU------------UCCAca--UgCUGCCGGC- -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 23784 | 0.67 | 0.898725 |
Target: 5'- uGCAGGC-CCAggAGGaucUGcGCGAgGGCCGa -3' miRNA: 3'- -CGUUUGcGGU--UCC---ACaUGCUgCCGGC- -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 14178 | 0.67 | 0.891935 |
Target: 5'- cGCGGAgGCCAucAGGgccagGUACGACaGGUUc -3' miRNA: 3'- -CGUUUgCGGU--UCCa----CAUGCUG-CCGGc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 21207 | 0.68 | 0.884901 |
Target: 5'- -----gGCCAAGGUG---GACGGCCu -3' miRNA: 3'- cguuugCGGUUCCACaugCUGCCGGc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 94261 | 0.68 | 0.87012 |
Target: 5'- uGCcuuCGCCGAGGUGUAcucugacccCGACauGGUCGc -3' miRNA: 3'- -CGuuuGCGGUUCCACAU---------GCUG--CCGGC- -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 12813 | 0.68 | 0.87012 |
Target: 5'- cGCuguGgGCCGAGGUG-ACGGCuGGCa- -3' miRNA: 3'- -CGuu-UgCGGUUCCACaUGCUG-CCGgc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 4301 | 0.68 | 0.867053 |
Target: 5'- cGCGGACGacaCAGGGUGgguguggaaggacACGA-GGCCGu -3' miRNA: 3'- -CGUUUGCg--GUUCCACa------------UGCUgCCGGC- -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 78987 | 0.68 | 0.862385 |
Target: 5'- gGCGuACGCCAGGGc---CGGgGGCCa -3' miRNA: 3'- -CGUuUGCGGUUCCacauGCUgCCGGc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 10286 | 0.68 | 0.846256 |
Target: 5'- cGgGAGCGCCGGGGcauaGUcCGACGGgCa -3' miRNA: 3'- -CgUUUGCGGUUCCa---CAuGCUGCCgGc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 39826 | 0.68 | 0.846256 |
Target: 5'- gGCuAugGCCGcGGc-UGCGGCGGCCu -3' miRNA: 3'- -CGuUugCGGUuCCacAUGCUGCCGGc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 88273 | 0.71 | 0.748564 |
Target: 5'- cGCGGugGUCAAGGUGgcaAagggucccgccggaGACGGCCu -3' miRNA: 3'- -CGUUugCGGUUCCACa--Ug-------------CUGCCGGc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 12545 | 0.71 | 0.714067 |
Target: 5'- gGCAAGCGCCAugccccAGGagGUaGCGACuGCCa -3' miRNA: 3'- -CGUUUGCGGU------UCCa-CA-UGCUGcCGGc -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 20355 | 0.72 | 0.682898 |
Target: 5'- aGCAGGCugGagAAGGUGUccGCGGCGGUCGa -3' miRNA: 3'- -CGUUUG--CggUUCCACA--UGCUGCCGGC- -5' |
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28348 | 3' | -53.5 | NC_005946.1 | + | 12374 | 1.11 | 0.002738 |
Target: 5'- aGCAAACGCCAAGGUGUACGACGGCCGu -3' miRNA: 3'- -CGUUUGCGGUUCCACAUGCUGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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