miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28348 3' -53.5 NC_005946.1 + 63963 0.66 0.945821
Target:  5'- -gGGACGCgGGGG-GUaucucugacccgucuGCGAUGGCCc -3'
miRNA:   3'- cgUUUGCGgUUCCaCA---------------UGCUGCCGGc -5'
28348 3' -53.5 NC_005946.1 + 7365 0.66 0.943984
Target:  5'- cGCGGAUGCgagGAGGUGcACGcCGGCa- -3'
miRNA:   3'- -CGUUUGCGg--UUCCACaUGCuGCCGgc -5'
28348 3' -53.5 NC_005946.1 + 15934 0.66 0.943984
Target:  5'- cGCAAGucUGCCGAGGcgGU-CG-UGGCCa -3'
miRNA:   3'- -CGUUU--GCGGUUCCa-CAuGCuGCCGGc -5'
28348 3' -53.5 NC_005946.1 + 29792 0.66 0.934196
Target:  5'- cGCAGAUGUaCGGGGUGUAgGuACccuugGGCCa -3'
miRNA:   3'- -CGUUUGCG-GUUCCACAUgC-UG-----CCGGc -5'
28348 3' -53.5 NC_005946.1 + 12884 0.66 0.92892
Target:  5'- cGCGGAgGCCGuggcucAGGUGagGCugGACGGCgGa -3'
miRNA:   3'- -CGUUUgCGGU------UCCACa-UG--CUGCCGgC- -5'
28348 3' -53.5 NC_005946.1 + 63543 0.66 0.923389
Target:  5'- aGCAgGACcCCAGGGUGaggguucucACGuCGGCCGc -3'
miRNA:   3'- -CGU-UUGcGGUUCCACa--------UGCuGCCGGC- -5'
28348 3' -53.5 NC_005946.1 + 13645 0.67 0.917603
Target:  5'- uGCGGAgGCCAggaacccgagucAGGUcaggAgGAUGGCCGg -3'
miRNA:   3'- -CGUUUgCGGU------------UCCAca--UgCUGCCGGC- -5'
28348 3' -53.5 NC_005946.1 + 23784 0.67 0.898725
Target:  5'- uGCAGGC-CCAggAGGaucUGcGCGAgGGCCGa -3'
miRNA:   3'- -CGUUUGcGGU--UCC---ACaUGCUgCCGGC- -5'
28348 3' -53.5 NC_005946.1 + 14178 0.67 0.891935
Target:  5'- cGCGGAgGCCAucAGGgccagGUACGACaGGUUc -3'
miRNA:   3'- -CGUUUgCGGU--UCCa----CAUGCUG-CCGGc -5'
28348 3' -53.5 NC_005946.1 + 21207 0.68 0.884901
Target:  5'- -----gGCCAAGGUG---GACGGCCu -3'
miRNA:   3'- cguuugCGGUUCCACaugCUGCCGGc -5'
28348 3' -53.5 NC_005946.1 + 94261 0.68 0.87012
Target:  5'- uGCcuuCGCCGAGGUGUAcucugacccCGACauGGUCGc -3'
miRNA:   3'- -CGuuuGCGGUUCCACAU---------GCUG--CCGGC- -5'
28348 3' -53.5 NC_005946.1 + 12813 0.68 0.87012
Target:  5'- cGCuguGgGCCGAGGUG-ACGGCuGGCa- -3'
miRNA:   3'- -CGuu-UgCGGUUCCACaUGCUG-CCGgc -5'
28348 3' -53.5 NC_005946.1 + 4301 0.68 0.867053
Target:  5'- cGCGGACGacaCAGGGUGgguguggaaggacACGA-GGCCGu -3'
miRNA:   3'- -CGUUUGCg--GUUCCACa------------UGCUgCCGGC- -5'
28348 3' -53.5 NC_005946.1 + 78987 0.68 0.862385
Target:  5'- gGCGuACGCCAGGGc---CGGgGGCCa -3'
miRNA:   3'- -CGUuUGCGGUUCCacauGCUgCCGGc -5'
28348 3' -53.5 NC_005946.1 + 10286 0.68 0.846256
Target:  5'- cGgGAGCGCCGGGGcauaGUcCGACGGgCa -3'
miRNA:   3'- -CgUUUGCGGUUCCa---CAuGCUGCCgGc -5'
28348 3' -53.5 NC_005946.1 + 39826 0.68 0.846256
Target:  5'- gGCuAugGCCGcGGc-UGCGGCGGCCu -3'
miRNA:   3'- -CGuUugCGGUuCCacAUGCUGCCGGc -5'
28348 3' -53.5 NC_005946.1 + 88273 0.71 0.748564
Target:  5'- cGCGGugGUCAAGGUGgcaAagggucccgccggaGACGGCCu -3'
miRNA:   3'- -CGUUugCGGUUCCACa--Ug-------------CUGCCGGc -5'
28348 3' -53.5 NC_005946.1 + 12545 0.71 0.714067
Target:  5'- gGCAAGCGCCAugccccAGGagGUaGCGACuGCCa -3'
miRNA:   3'- -CGUUUGCGGU------UCCa-CA-UGCUGcCGGc -5'
28348 3' -53.5 NC_005946.1 + 20355 0.72 0.682898
Target:  5'- aGCAGGCugGagAAGGUGUccGCGGCGGUCGa -3'
miRNA:   3'- -CGUUUG--CggUUCCACA--UGCUGCCGGC- -5'
28348 3' -53.5 NC_005946.1 + 12374 1.11 0.002738
Target:  5'- aGCAAACGCCAAGGUGUACGACGGCCGu -3'
miRNA:   3'- -CGUUUGCGGUUCCACAUGCUGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.