Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28348 | 5' | -54.9 | NC_005946.1 | + | 53431 | 0.66 | 0.915817 |
Target: 5'- cGUGGAcCGuGGACGCCaaaggggUAGAGgaCCu -3' miRNA: 3'- cCGCCU-GCuCCUGUGGg------AUCUCaaGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 878 | 0.7 | 0.724054 |
Target: 5'- aGUGGAUGAGGuugacguuuucguACugCUUAGAGUgCCu -3' miRNA: 3'- cCGCCUGCUCC-------------UGugGGAUCUCAaGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 83725 | 0.69 | 0.744963 |
Target: 5'- gGGCgcgGGugGGGGGCgAUCCaGGAG-UCCa -3' miRNA: 3'- -CCG---CCugCUCCUG-UGGGaUCUCaAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 48471 | 0.69 | 0.77403 |
Target: 5'- aGGaaGAUGAGGGCuCCCUcuggcaGGGGUUCg -3' miRNA: 3'- -CCgcCUGCUCCUGuGGGA------UCUCAAGg -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 95307 | 0.69 | 0.78347 |
Target: 5'- cGUGGACGAGGcCACCagAGAGgcggaaaagaUCCu -3' miRNA: 3'- cCGCCUGCUCCuGUGGgaUCUCa---------AGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 94745 | 0.68 | 0.828379 |
Target: 5'- uGGCGGGucacagcauCaAGGGCACCgUccucccagAGGGUUCCa -3' miRNA: 3'- -CCGCCU---------GcUCCUGUGGgA--------UCUCAAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 72841 | 0.67 | 0.845111 |
Target: 5'- aGgGGGCGGGGuucuCCCUGGAGacacCCa -3' miRNA: 3'- cCgCCUGCUCCugu-GGGAUCUCaa--GG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 62417 | 0.67 | 0.845111 |
Target: 5'- uGCGGAUGuuccauGGAC-CCCgcGGGGUUCg -3' miRNA: 3'- cCGCCUGCu-----CCUGuGGGa-UCUCAAGg -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 17082 | 0.67 | 0.853181 |
Target: 5'- gGGCuacGAUGAGaACGCCCUGGAGg--- -3' miRNA: 3'- -CCGc--CUGCUCcUGUGGGAUCUCaagg -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 35255 | 0.7 | 0.704822 |
Target: 5'- gGGCauGGGCGAGGACGgCUgcGGGaugUCCu -3' miRNA: 3'- -CCG--CCUGCUCCUGUgGGauCUCa--AGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 92529 | 0.71 | 0.684333 |
Target: 5'- cGGCGGG-GAGGAUcuGCCCcu--GUUCCa -3' miRNA: 3'- -CCGCCUgCUCCUG--UGGGaucuCAAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 9324 | 0.71 | 0.683303 |
Target: 5'- gGGUGGACggGAGGACAgaggacagaagguCCCUAGGuGUcgcUCCc -3' miRNA: 3'- -CCGCCUG--CUCCUGU-------------GGGAUCU-CA---AGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 72684 | 0.76 | 0.381077 |
Target: 5'- cGGCGuGACG-GGugACCCcgUGGGGUUCg -3' miRNA: 3'- -CCGC-CUGCuCCugUGGG--AUCUCAAGg -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 102346 | 0.74 | 0.509772 |
Target: 5'- uGGCGG-UGAGGGucuCGCCgUGGAGgUCCg -3' miRNA: 3'- -CCGCCuGCUCCU---GUGGgAUCUCaAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 4632 | 0.73 | 0.5187 |
Target: 5'- aGGCGGugGGGGuCACgCC-AGAGUgcuucaucagggcUCCu -3' miRNA: 3'- -CCGCCugCUCCuGUG-GGaUCUCA-------------AGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 41211 | 0.72 | 0.611685 |
Target: 5'- gGGCGGugGAaaaGGACGaagucgcaCUAGAGUuUCCa -3' miRNA: 3'- -CCGCCugCU---CCUGUgg------GAUCUCA-AGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 61276 | 0.72 | 0.622082 |
Target: 5'- aGGCggGGACGGGGuucgACGCCUgcgAGAGgaCCg -3' miRNA: 3'- -CCG--CCUGCUCC----UGUGGGa--UCUCaaGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 3012 | 0.71 | 0.632487 |
Target: 5'- aGGagGGACagGAGGAUGCCCaGGAuGUUCCc -3' miRNA: 3'- -CCg-CCUG--CUCCUGUGGGaUCU-CAAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 52358 | 0.71 | 0.653286 |
Target: 5'- gGGCcGGCGGGGACAUagaagagggCCUGGAGcUCUu -3' miRNA: 3'- -CCGcCUGCUCCUGUG---------GGAUCUCaAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 28558 | 0.71 | 0.663665 |
Target: 5'- aGGUGGACucgaaGGGGACgACCCUcacccuGUUCCa -3' miRNA: 3'- -CCGCCUG-----CUCCUG-UGGGAucu---CAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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