Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28349 | 5' | -54.4 | NC_005946.1 | + | 35938 | 0.66 | 0.928203 |
Target: 5'- gCCGcCGcCAGGGCCCUCGcaGCGggaCGUUu -3' miRNA: 3'- -GGCuGCcGUUCUGGGAGU--UGCa--GCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 100931 | 0.66 | 0.922711 |
Target: 5'- gCCGcCGGCAgAGACCCagcagaggaCAGCGU-GUCc -3' miRNA: 3'- -GGCuGCCGU-UCUGGGa--------GUUGCAgCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 62876 | 0.66 | 0.916969 |
Target: 5'- aCCucAUGGCucGACCCUgAACGU-GUCa -3' miRNA: 3'- -GGc-UGCCGuuCUGGGAgUUGCAgCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 45997 | 0.66 | 0.916969 |
Target: 5'- cCCGACaGCcuugucaaagaAGGGCaCCUUGGCGUCGg- -3' miRNA: 3'- -GGCUGcCG-----------UUCUG-GGAGUUGCAGCag -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 65016 | 0.66 | 0.916969 |
Target: 5'- uUGACGccGCugagacuGGACCCg--GCGUCGUCa -3' miRNA: 3'- gGCUGC--CGu------UCUGGGaguUGCAGCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 51757 | 0.67 | 0.891547 |
Target: 5'- aCCGuCGG--AGGCCCUCcAACGUgacaGUCa -3' miRNA: 3'- -GGCuGCCguUCUGGGAG-UUGCAg---CAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 22144 | 0.67 | 0.869984 |
Target: 5'- gCCGcaGCGGgaAAGACUCUugCAGCGcCGUCa -3' miRNA: 3'- -GGC--UGCCg-UUCUGGGA--GUUGCaGCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 23863 | 0.68 | 0.862345 |
Target: 5'- uCCG--GGCGGGACCCUCuugacaagGAUGUUGUg -3' miRNA: 3'- -GGCugCCGUUCUGGGAG--------UUGCAGCAg -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 43415 | 0.68 | 0.846424 |
Target: 5'- aUGAUGGCGAgggaagcgguGACCCUCuuuAGC-UCGUCa -3' miRNA: 3'- gGCUGCCGUU----------CUGGGAG---UUGcAGCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 98112 | 0.68 | 0.846424 |
Target: 5'- gCGACGGUcauguAGACguuggCCUCGACGgUGUCg -3' miRNA: 3'- gGCUGCCGu----UCUG-----GGAGUUGCaGCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 73498 | 0.68 | 0.838157 |
Target: 5'- cCCGACGGCAGGuCCgUCuAC-UCGa- -3' miRNA: 3'- -GGCUGCCGUUCuGGgAGuUGcAGCag -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 99033 | 0.68 | 0.838157 |
Target: 5'- uCCGGCGGgAGGAgCCUC-GCGgugaaUGUCu -3' miRNA: 3'- -GGCUGCCgUUCUgGGAGuUGCa----GCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 43847 | 0.69 | 0.794058 |
Target: 5'- gUCGACG---AGACCCUCGAUGgUGUCg -3' miRNA: 3'- -GGCUGCcguUCUGGGAGUUGCaGCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 21241 | 0.73 | 0.581299 |
Target: 5'- -aGACGGC-AGACUCUC-ACGgCGUCa -3' miRNA: 3'- ggCUGCCGuUCUGGGAGuUGCaGCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 10540 | 0.73 | 0.56069 |
Target: 5'- cCCGAagGGCAcGGACCC-CG-CGUCGUCc -3' miRNA: 3'- -GGCUg-CCGU-UCUGGGaGUuGCAGCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 96285 | 0.76 | 0.395513 |
Target: 5'- aCGAUGGgAccguGGACCCUCucgggcuccucaaaGACGUCGUCg -3' miRNA: 3'- gGCUGCCgU----UCUGGGAG--------------UUGCAGCAG- -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 59818 | 0.78 | 0.33272 |
Target: 5'- uUGACGGCcguGGuACCCUUGACGUCGUa -3' miRNA: 3'- gGCUGCCGu--UC-UGGGAGUUGCAGCAg -5' |
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28349 | 5' | -54.4 | NC_005946.1 | + | 12484 | 1.12 | 0.002001 |
Target: 5'- gCCGACGGCAAGACCCUCAACGUCGUCa -3' miRNA: 3'- -GGCUGCCGUUCUGGGAGUUGCAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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