Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28351 | 3' | -57.9 | NC_005946.1 | + | 44313 | 0.66 | 0.774807 |
Target: 5'- aGGGCuGGGUGGAGGccccuGUUugCGGUg -3' miRNA: 3'- gUUUG-CCCACCUCCucu--CGGugGCCG- -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 36254 | 0.66 | 0.755727 |
Target: 5'- -uGGCGGGUcuGGGGGGAGCgGCCu-- -3' miRNA: 3'- guUUGCCCAc-CUCCUCUCGgUGGccg -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 103768 | 0.66 | 0.752825 |
Target: 5'- gAGACGGGgcugacguacccauUGGAGGGGuAGCUGCCc-- -3' miRNA: 3'- gUUUGCCC--------------ACCUCCUC-UCGGUGGccg -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 46867 | 0.66 | 0.746016 |
Target: 5'- -uGACuGGGUuccaGGccaggaaccuAGGAGAGCUGCCGGg -3' miRNA: 3'- guUUG-CCCA----CC----------UCCUCUCGGUGGCCg -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 4359 | 0.66 | 0.746016 |
Target: 5'- uGAGCaGGGaGGAcaugucuacguuGGAGGGCCACCccGCg -3' miRNA: 3'- gUUUG-CCCaCCU------------CCUCUCGGUGGc-CG- -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 83881 | 0.66 | 0.746016 |
Target: 5'- aAGACaGGGU-GAGGGGGGCCgugUGGCc -3' miRNA: 3'- gUUUG-CCCAcCUCCUCUCGGug-GCCG- -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 94927 | 0.67 | 0.679821 |
Target: 5'- -uGACGaGUuuaaggcuuuuaugcGGAGGAGAGCC-CCGGa -3' miRNA: 3'- guUUGCcCA---------------CCUCCUCUCGGuGGCCg -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 98547 | 0.68 | 0.665467 |
Target: 5'- cCGGAUGGGUGGGGGu---CCugCaGGCu -3' miRNA: 3'- -GUUUGCCCACCUCCucucGGugG-CCG- -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 93827 | 0.68 | 0.65518 |
Target: 5'- gGGACGGGgugugGGAGGAaAGCUcCUGGa -3' miRNA: 3'- gUUUGCCCa----CCUCCUcUCGGuGGCCg -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 13892 | 0.69 | 0.607747 |
Target: 5'- cCGAGaGGGUcaGGGGGAGggugagcuaccucaaAGCCGCCaGGCc -3' miRNA: 3'- -GUUUgCCCA--CCUCCUC---------------UCGGUGG-CCG- -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 83722 | 0.69 | 0.572894 |
Target: 5'- --cGCGGGUGGGGGgcgauccaGGAGuCCACCu-- -3' miRNA: 3'- guuUGCCCACCUCC--------UCUC-GGUGGccg -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 3455 | 0.7 | 0.54254 |
Target: 5'- gGGGCGGGUGuAGGGGucuaCGCCGGUc -3' miRNA: 3'- gUUUGCCCACcUCCUCucg-GUGGCCG- -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 7365 | 0.72 | 0.401588 |
Target: 5'- --cGCGGaUGcGAGGAGGuGCaCGCCGGCa -3' miRNA: 3'- guuUGCCcAC-CUCCUCU-CG-GUGGCCG- -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 103060 | 0.72 | 0.401588 |
Target: 5'- ----aGGGUGGAGuGGGAGCCAgggGGCu -3' miRNA: 3'- guuugCCCACCUC-CUCUCGGUgg-CCG- -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 13843 | 0.73 | 0.357601 |
Target: 5'- --cGCGGGUcuuacauuugccggGGAGGugcuuGGAGgCACCGGCa -3' miRNA: 3'- guuUGCCCA--------------CCUCC-----UCUCgGUGGCCG- -5' |
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28351 | 3' | -57.9 | NC_005946.1 | + | 13473 | 1.11 | 0.000881 |
Target: 5'- gCAAACGGGUGGAGGAGAGCCACCGGCa -3' miRNA: 3'- -GUUUGCCCACCUCCUCUCGGUGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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