Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28352 | 3' | -53.4 | NC_005946.1 | + | 58102 | 0.66 | 0.940746 |
Target: 5'- uGGCCgCGGCGcCGGG-CaUGCc--UGCCc -3' miRNA: 3'- -CCGG-GCUGC-GCCCaGaAUGuaaACGG- -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 14983 | 0.67 | 0.927391 |
Target: 5'- cGGUCCGACcccauguuggaggggGCGGGguagaCggGCAcugUGCCg -3' miRNA: 3'- -CCGGGCUG---------------CGCCCa----GaaUGUaa-ACGG- -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 85135 | 0.67 | 0.913536 |
Target: 5'- gGGCuCCGAUGUGGcGUUgu-CAg--GCCg -3' miRNA: 3'- -CCG-GGCUGCGCC-CAGaauGUaaaCGG- -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 48279 | 0.67 | 0.894179 |
Target: 5'- aGGCCCGGguaagggugcUGgGGGUgCUUGCAg--GCg -3' miRNA: 3'- -CCGGGCU----------GCgCCCA-GAAUGUaaaCGg -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 36269 | 0.67 | 0.893496 |
Target: 5'- gGGCuCCGGCggcggugGCGGGUCUggggGgAgcgGCCu -3' miRNA: 3'- -CCG-GGCUG-------CGCCCAGAa---UgUaaaCGG- -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 8225 | 0.68 | 0.880049 |
Target: 5'- uGCCUGGCGuUGGGUCUgcaGCAgggagGCa -3' miRNA: 3'- cCGGGCUGC-GCCCAGAa--UGUaaa--CGg -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 100735 | 0.68 | 0.872629 |
Target: 5'- aGCCCGuACGCGGGaUCgcgUugGUUUaaCCa -3' miRNA: 3'- cCGGGC-UGCGCCC-AGa--AugUAAAc-GG- -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 82672 | 0.68 | 0.857108 |
Target: 5'- gGGCCCuACGCGGGU---GCAaugGCUc -3' miRNA: 3'- -CCGGGcUGCGCCCAgaaUGUaaaCGG- -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 62235 | 0.69 | 0.837343 |
Target: 5'- uGCCCGGCGCGGGggaagcggaccugUUUACccucgcGCCc -3' miRNA: 3'- cCGGGCUGCGCCCa------------GAAUGuaaa--CGG- -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 24918 | 0.7 | 0.805589 |
Target: 5'- gGGCuCCGGCGUggaGGGUgUgagccGgGUUUGCCg -3' miRNA: 3'- -CCG-GGCUGCG---CCCAgAa----UgUAAACGG- -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 24433 | 0.7 | 0.786984 |
Target: 5'- aGCCCGAaaacaGUGGGUUcUGCuug-GCCa -3' miRNA: 3'- cCGGGCUg----CGCCCAGaAUGuaaaCGG- -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 19324 | 0.71 | 0.748073 |
Target: 5'- aGGUCCGACGUcgaGGGUUggACAcgagagUUUGCa -3' miRNA: 3'- -CCGGGCUGCG---CCCAGaaUGU------AAACGg -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 66999 | 0.72 | 0.655167 |
Target: 5'- cGGUCCGACgcuguGCGGGUCUuuuacggcaagUACGUcgaaGCCu -3' miRNA: 3'- -CCGGGCUG-----CGCCCAGA-----------AUGUAaa--CGG- -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 59877 | 0.73 | 0.623497 |
Target: 5'- cGGCCCacGACGCGGGaUCguaaccgGCGggUGCa -3' miRNA: 3'- -CCGGG--CUGCGCCC-AGaa-----UGUaaACGg -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 63813 | 0.73 | 0.60978 |
Target: 5'- aGGCCCucuuGACGUaGGGUCUggggaccaggagcuUGCAcaugUUUGCCa -3' miRNA: 3'- -CCGGG----CUGCG-CCCAGA--------------AUGU----AAACGG- -5' |
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28352 | 3' | -53.4 | NC_005946.1 | + | 13851 | 1.15 | 0.001442 |
Target: 5'- aGGCCCGACGCGGGUCUUACAUUUGCCg -3' miRNA: 3'- -CCGGGCUGCGCCCAGAAUGUAAACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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