miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28352 5' -57 NC_005946.1 + 99534 0.66 0.809907
Target:  5'- cAGGaccaCGCCGGC--GACCCugcaaggauccugagAUCUCAGGu -3'
miRNA:   3'- cUCC----GUGGCCGuaCUGGG---------------UAGAGUCC- -5'
28352 5' -57 NC_005946.1 + 35240 0.66 0.797223
Target:  5'- -cGGCugCGGgAUGuCCuCGUacCUCGGGa -3'
miRNA:   3'- cuCCGugGCCgUACuGG-GUA--GAGUCC- -5'
28352 5' -57 NC_005946.1 + 56399 0.66 0.797223
Target:  5'- gGAGGCACCaGGCcgucuGUGACggCCgaGUC-CAGGa -3'
miRNA:   3'- -CUCCGUGG-CCG-----UACUG--GG--UAGaGUCC- -5'
28352 5' -57 NC_005946.1 + 67524 0.67 0.749624
Target:  5'- cAGGCgaaGCCGGCcuUGACCaggaCGUCUgAGGc -3'
miRNA:   3'- cUCCG---UGGCCGu-ACUGG----GUAGAgUCC- -5'
28352 5' -57 NC_005946.1 + 63330 0.67 0.749624
Target:  5'- cGGGGCACa-GCAUGAcguuaCCCGUaugCAGGu -3'
miRNA:   3'- -CUCCGUGgcCGUACU-----GGGUAga-GUCC- -5'
28352 5' -57 NC_005946.1 + 88339 0.67 0.729767
Target:  5'- gGAGGCgGCCgGGCAggcacugGACCUc-CUCAGGc -3'
miRNA:   3'- -CUCCG-UGG-CCGUa------CUGGGuaGAGUCC- -5'
28352 5' -57 NC_005946.1 + 88161 0.67 0.709559
Target:  5'- gGGGGUACCguGGCucaGGCCCuGUC-CAGGg -3'
miRNA:   3'- -CUCCGUGG--CCGua-CUGGG-UAGaGUCC- -5'
28352 5' -57 NC_005946.1 + 100934 0.68 0.668401
Target:  5'- aGAGcCGCCGGCAgaGACCCAgCagAGGa -3'
miRNA:   3'- -CUCcGUGGCCGUa-CUGGGUaGagUCC- -5'
28352 5' -57 NC_005946.1 + 53332 0.68 0.668401
Target:  5'- -uGGCAgCGGCGuUGGCCgaggcaGUCUCAGa -3'
miRNA:   3'- cuCCGUgGCCGU-ACUGGg-----UAGAGUCc -5'
28352 5' -57 NC_005946.1 + 78135 0.68 0.666325
Target:  5'- cAGGCugCGGCAauugcgUGACCCugaaaagggcgCUCAaGGa -3'
miRNA:   3'- cUCCGugGCCGU------ACUGGGua---------GAGU-CC- -5'
28352 5' -57 NC_005946.1 + 76577 0.69 0.63405
Target:  5'- -cGGU-CCGGUcgGGCCCGUgggagcggcugggcCUCAGGg -3'
miRNA:   3'- cuCCGuGGCCGuaCUGGGUA--------------GAGUCC- -5'
28352 5' -57 NC_005946.1 + 49740 0.7 0.530992
Target:  5'- cGAGGCguacucuuggACCgGGCAUGuCCCGUugaccgacgcaaccCUCAGGg -3'
miRNA:   3'- -CUCCG----------UGG-CCGUACuGGGUA--------------GAGUCC- -5'
28352 5' -57 NC_005946.1 + 13812 1.09 0.001494
Target:  5'- gGAGGCACCGGCAUGACCCAUCUCAGGc -3'
miRNA:   3'- -CUCCGUGGCCGUACUGGGUAGAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.