Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28354 | 3' | -57.9 | NC_005946.1 | + | 9229 | 0.66 | 0.758132 |
Target: 5'- aGGCAGGUcgcaagcUCCUcAGGAggG-CAGGGGa -3' miRNA: 3'- -UCGUCCA-------AGGAcUCCUggCaGUCCCC- -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 51733 | 0.66 | 0.739669 |
Target: 5'- cAGUcaAGGUUgugaCUGucaaGGGACUGUCAGGGu -3' miRNA: 3'- -UCG--UCCAAg---GAC----UCCUGGCAGUCCCc -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 4288 | 0.67 | 0.7308 |
Target: 5'- gGGUGGGUguggaaggacacGAGG-CCGUCGGGGGc -3' miRNA: 3'- -UCGUCCAagga--------CUCCuGGCAGUCCCC- -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 103017 | 0.67 | 0.727827 |
Target: 5'- cGCGGGUcUCCccggagcaaaggGAGGGCCGggagaCAcGGGGa -3' miRNA: 3'- uCGUCCA-AGGa-----------CUCCUGGCa----GU-CCCC- -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 83941 | 0.67 | 0.679416 |
Target: 5'- gGGCAGaGUggagggacgUCCUGGGGACaGaCAGGGu -3' miRNA: 3'- -UCGUC-CA---------AGGACUCCUGgCaGUCCCc -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 14310 | 0.68 | 0.658919 |
Target: 5'- cGGCAGGUacaUCCccGAGGgcuacGCCGaCAuGGGGg -3' miRNA: 3'- -UCGUCCA---AGGa-CUCC-----UGGCaGU-CCCC- -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 102908 | 0.68 | 0.648633 |
Target: 5'- cGGCAGGUUUCaGGGGA--GaCAGGGGu -3' miRNA: 3'- -UCGUCCAAGGaCUCCUggCaGUCCCC- -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 2304 | 0.68 | 0.648633 |
Target: 5'- gAGCAGGgugUCCUcgGAcgcGGAccCCGcCGGGGGc -3' miRNA: 3'- -UCGUCCa--AGGA--CU---CCU--GGCaGUCCCC- -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 76925 | 0.69 | 0.576712 |
Target: 5'- ---cGGaUCCcaaGAGGACCGUCcGGGGa -3' miRNA: 3'- ucguCCaAGGa--CUCCUGGCAGuCCCC- -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 86882 | 0.7 | 0.546343 |
Target: 5'- --aGGGUU--UGAGGACUGUCuGGGGa -3' miRNA: 3'- ucgUCCAAggACUCCUGGCAGuCCCC- -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 68964 | 0.7 | 0.5067 |
Target: 5'- cAGCuGGUUCUUGAGGGCgGcUCuGGuGGu -3' miRNA: 3'- -UCGuCCAAGGACUCCUGgC-AGuCC-CC- -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 95407 | 0.73 | 0.364071 |
Target: 5'- cGGCGGGUccUCCaaaaccggccaaGACCGUCAGGGGg -3' miRNA: 3'- -UCGUCCA--AGGacuc--------CUGGCAGUCCCC- -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 48295 | 0.73 | 0.347412 |
Target: 5'- gAGCAGGUUggcCCUGAGGcCCGgguaAGGGu -3' miRNA: 3'- -UCGUCCAA---GGACUCCuGGCag--UCCCc -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 61194 | 0.74 | 0.33206 |
Target: 5'- gGGCAGG---CUGAGGGCCaaCGGGGGg -3' miRNA: 3'- -UCGUCCaagGACUCCUGGcaGUCCCC- -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 95119 | 0.75 | 0.282302 |
Target: 5'- uGCAGGcggUCCUGAGGAUCGcucccacCAGGGa -3' miRNA: 3'- uCGUCCa--AGGACUCCUGGCa------GUCCCc -5' |
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28354 | 3' | -57.9 | NC_005946.1 | + | 14074 | 1.11 | 0.001006 |
Target: 5'- cAGCAGGUUCCUGAGGACCGUCAGGGGg -3' miRNA: 3'- -UCGUCCAAGGACUCCUGGCAGUCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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