miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28355 3' -51.6 NC_005946.1 + 89775 0.66 0.972476
Target:  5'- gCCuCUCguagacaaaGAGGGUCAGGACCuggggagUGUc -3'
miRNA:   3'- -GGuGAGa--------CUCCCAGUUCUGGuga----ACG- -5'
28355 3' -51.6 NC_005946.1 + 91511 0.66 0.969477
Target:  5'- aCACggaCUGGGaGGUCAcGACCAacCUcGCa -3'
miRNA:   3'- gGUGa--GACUC-CCAGUuCUGGU--GAaCG- -5'
28355 3' -51.6 NC_005946.1 + 10133 0.67 0.959095
Target:  5'- aCCAgcacCUCUGAGGGUCcauGCCG--UGCc -3'
miRNA:   3'- -GGU----GAGACUCCCAGuucUGGUgaACG- -5'
28355 3' -51.6 NC_005946.1 + 63811 0.67 0.959095
Target:  5'- gCC-CUCUugacGuAGGGUCuggGGACCaggaGCUUGCa -3'
miRNA:   3'- -GGuGAGA----C-UCCCAGu--UCUGG----UGAACG- -5'
28355 3' -51.6 NC_005946.1 + 36332 0.67 0.955152
Target:  5'- cCCACUCUGGGaaagaGUCGAGGuCCGCc--- -3'
miRNA:   3'- -GGUGAGACUCc----CAGUUCU-GGUGaacg -5'
28355 3' -51.6 NC_005946.1 + 39856 0.67 0.954744
Target:  5'- cCCGCUCUGAgaccgucugucuaGGGcUCuggcuauGGCCGCggcUGCg -3'
miRNA:   3'- -GGUGAGACU-------------CCC-AGuu-----CUGGUGa--ACG- -5'
28355 3' -51.6 NC_005946.1 + 65335 0.67 0.946054
Target:  5'- gCACUCUGAccaagcagagucgGGcGUCgAGGGCCACcucucUGCa -3'
miRNA:   3'- gGUGAGACU-------------CC-CAG-UUCUGGUGa----ACG- -5'
28355 3' -51.6 NC_005946.1 + 26459 0.68 0.931616
Target:  5'- gCACUgcCUGAcGGGcuuggUCAAGACCACcccGCa -3'
miRNA:   3'- gGUGA--GACU-CCC-----AGUUCUGGUGaa-CG- -5'
28355 3' -51.6 NC_005946.1 + 56695 0.69 0.894049
Target:  5'- uCCACagggUCUGAGGGUaCAuGGcgucuauCCACUUGUc -3'
miRNA:   3'- -GGUG----AGACUCCCA-GUuCU-------GGUGAACG- -5'
28355 3' -51.6 NC_005946.1 + 16018 1.13 0.002797
Target:  5'- gCCACUCUGAGGGUCAAGACCACUUGCc -3'
miRNA:   3'- -GGUGAGACUCCCAGUUCUGGUGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.