miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28357 5' -59.2 NC_005946.1 + 61993 0.66 0.668401
Target:  5'- aUGCC-CUggaGCUGugGaGGAGGCuGGGGc -3'
miRNA:   3'- aACGGaGA---CGGCugC-CCUCCGuUCUC- -5'
28357 5' -59.2 NC_005946.1 + 57898 0.66 0.616327
Target:  5'- -gGCC-CUGuuGGCcGGGGGgGAGAGc -3'
miRNA:   3'- aaCGGaGACggCUGcCCUCCgUUCUC- -5'
28357 5' -59.2 NC_005946.1 + 88113 0.67 0.574835
Target:  5'- --cCCUCUGCCGugGaGGuugcGGGC-GGAGa -3'
miRNA:   3'- aacGGAGACGGCugC-CC----UCCGuUCUC- -5'
28357 5' -59.2 NC_005946.1 + 72117 0.68 0.533006
Target:  5'- -gGCCaUCaUGaCGGCGGGAGGCuucaaccAAGAGg -3'
miRNA:   3'- aaCGG-AG-ACgGCUGCCCUCCG-------UUCUC- -5'
28357 5' -59.2 NC_005946.1 + 8231 0.69 0.469169
Target:  5'- -gGCCaCUGCCuGGCguugggucugcagcaGGGAGGCAGGAc -3'
miRNA:   3'- aaCGGaGACGG-CUG---------------CCCUCCGUUCUc -5'
28357 5' -59.2 NC_005946.1 + 82446 0.69 0.45969
Target:  5'- -cGuCCUCgGCCgaGaggauggacgugucaGCGGGAGGCAGGAGa -3'
miRNA:   3'- aaC-GGAGaCGG--C---------------UGCCCUCCGUUCUC- -5'
28357 5' -59.2 NC_005946.1 + 44385 0.69 0.446592
Target:  5'- cUGUCUgCgGCCGugGGGAGGUGuaucucguugcAGAGg -3'
miRNA:   3'- aACGGA-GaCGGCugCCCUCCGU-----------UCUC- -5'
28357 5' -59.2 NC_005946.1 + 14652 0.7 0.419245
Target:  5'- cUGgCUCaGCCGGgGGGAGGCcgacAAGGGc -3'
miRNA:   3'- aACgGAGaCGGCUgCCCUCCG----UUCUC- -5'
28357 5' -59.2 NC_005946.1 + 20302 0.72 0.320731
Target:  5'- -cGCCUCUGCCuuuuccGACGGG-GGCAuGGu -3'
miRNA:   3'- aaCGGAGACGG------CUGCCCuCCGUuCUc -5'
28357 5' -59.2 NC_005946.1 + 82541 0.75 0.195992
Target:  5'- -cGCCUCguccggggagagGCUGgaggugucuGCGGGAGGCAGGAGa -3'
miRNA:   3'- aaCGGAGa-----------CGGC---------UGCCCUCCGUUCUC- -5'
28357 5' -59.2 NC_005946.1 + 56280 0.79 0.110942
Target:  5'- -gGCCUCUGCCGcCGGGuccauGGCAAGcAGa -3'
miRNA:   3'- aaCGGAGACGGCuGCCCu----CCGUUC-UC- -5'
28357 5' -59.2 NC_005946.1 + 19573 1.05 0.001411
Target:  5'- cUUGCCUCUGCCGACGGGAGGCAAGAGu -3'
miRNA:   3'- -AACGGAGACGGCUGCCCUCCGUUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.