miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28359 3' -51.1 NC_005946.1 + 2913 0.66 0.980996
Target:  5'- gCGAGgauCGCCUCggauauagagGCCg---CCGACc -3'
miRNA:   3'- gGUUCau-GCGGAGa---------CGGaaaaGGCUG- -5'
28359 3' -51.1 NC_005946.1 + 96948 0.66 0.980996
Target:  5'- gCAAugACGUCUCUGCCacuguccUCUGACu -3'
miRNA:   3'- gGUUcaUGCGGAGACGGaaa----AGGCUG- -5'
28359 3' -51.1 NC_005946.1 + 64083 0.66 0.973432
Target:  5'- uCC-AGUGCGUCUUUccaCCUgagcaUUCCGACg -3'
miRNA:   3'- -GGuUCAUGCGGAGAc--GGAa----AAGGCUG- -5'
28359 3' -51.1 NC_005946.1 + 78583 0.66 0.970482
Target:  5'- cCCGAGgcCGUCUUugagGCCa-UUCCGGCu -3'
miRNA:   3'- -GGUUCauGCGGAGa---CGGaaAAGGCUG- -5'
28359 3' -51.1 NC_005946.1 + 40410 0.67 0.965287
Target:  5'- -aAAG-ACGCuCUCUGCCUgcuugggguccaCCGACa -3'
miRNA:   3'- ggUUCaUGCG-GAGACGGAaaa---------GGCUG- -5'
28359 3' -51.1 NC_005946.1 + 69104 0.67 0.960241
Target:  5'- -aGAGUccuuUGCCUCUGCCUUggCCu-- -3'
miRNA:   3'- ggUUCAu---GCGGAGACGGAAaaGGcug -5'
28359 3' -51.1 NC_005946.1 + 45076 0.67 0.95634
Target:  5'- aCAGGU--GCCUCUGCCUcucugCCGcCu -3'
miRNA:   3'- gGUUCAugCGGAGACGGAaaa--GGCuG- -5'
28359 3' -51.1 NC_005946.1 + 13523 0.67 0.955937
Target:  5'- gCGAGUACgucaacggcagcgGCCUguccCUGCUg--UCCGACa -3'
miRNA:   3'- gGUUCAUG-------------CGGA----GACGGaaaAGGCUG- -5'
28359 3' -51.1 NC_005946.1 + 20776 0.68 0.947778
Target:  5'- -gGAGcAgGCCUCgGCCgugUCCGGCc -3'
miRNA:   3'- ggUUCaUgCGGAGaCGGaaaAGGCUG- -5'
28359 3' -51.1 NC_005946.1 + 66971 0.68 0.947778
Target:  5'- gCAAGUACGUCgaaGCC---UCCGACc -3'
miRNA:   3'- gGUUCAUGCGGagaCGGaaaAGGCUG- -5'
28359 3' -51.1 NC_005946.1 + 30155 0.68 0.932971
Target:  5'- uCUcuGUugGCCUUUGCCUUUgCCa-- -3'
miRNA:   3'- -GGuuCAugCGGAGACGGAAAaGGcug -5'
28359 3' -51.1 NC_005946.1 + 11441 0.7 0.88911
Target:  5'- uCCAcGUAC-UCUCUGCCguccgcaUCCGGCa -3'
miRNA:   3'- -GGUuCAUGcGGAGACGGaaa----AGGCUG- -5'
28359 3' -51.1 NC_005946.1 + 101263 0.7 0.86645
Target:  5'- aCGAGUACGUCUCUGUg--UUCC-ACa -3'
miRNA:   3'- gGUUCAUGCGGAGACGgaaAAGGcUG- -5'
28359 3' -51.1 NC_005946.1 + 20310 1.14 0.002912
Target:  5'- aCCAAGUACGCCUCUGCCUUUUCCGACg -3'
miRNA:   3'- -GGUUCAUGCGGAGACGGAAAAGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.