miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28361 5' -61.5 NC_005946.1 + 76356 0.66 0.581651
Target:  5'- -gCG-GGGCgCCUGGAUcucaGGGCCCg- -3'
miRNA:   3'- gaGCuCCCG-GGACUUGug--CCCGGGag -5'
28361 5' -61.5 NC_005946.1 + 94438 0.66 0.551709
Target:  5'- cCUCGcc-GCCCUGGugA-GGGCCCUg -3'
miRNA:   3'- -GAGCuccCGGGACUugUgCCCGGGAg -5'
28361 5' -61.5 NC_005946.1 + 11251 0.66 0.532007
Target:  5'- cCUCGaAGGccGCCCUGcuCAgGGGUCCg- -3'
miRNA:   3'- -GAGC-UCC--CGGGACuuGUgCCCGGGag -5'
28361 5' -61.5 NC_005946.1 + 96285 0.66 0.532007
Target:  5'- -aCGAuGGGaCCgUGGACccucuCGGGCuCCUCa -3'
miRNA:   3'- gaGCU-CCC-GGgACUUGu----GCCCG-GGAG- -5'
28361 5' -61.5 NC_005946.1 + 27831 0.66 0.532007
Target:  5'- -aCGGGGGCCCUccucGACAgcuuguccuCGGGCCUc- -3'
miRNA:   3'- gaGCUCCCGGGAc---UUGU---------GCCCGGGag -5'
28361 5' -61.5 NC_005946.1 + 68558 0.67 0.512565
Target:  5'- aCUgGAGGGUCCUGGcCccaGGGCaCUCg -3'
miRNA:   3'- -GAgCUCCCGGGACUuGug-CCCGgGAG- -5'
28361 5' -61.5 NC_005946.1 + 102076 0.67 0.512565
Target:  5'- uCUCG-GGGUCCgucaGGCugGGGUCCa- -3'
miRNA:   3'- -GAGCuCCCGGGac--UUGugCCCGGGag -5'
28361 5' -61.5 NC_005946.1 + 34654 0.67 0.502953
Target:  5'- --gGucGGgCCUGGACAUggauaucuggaGGGCCCUCa -3'
miRNA:   3'- gagCucCCgGGACUUGUG-----------CCCGGGAG- -5'
28361 5' -61.5 NC_005946.1 + 97617 0.67 0.483973
Target:  5'- cCUCGGGGGUCUUGAGCACcaaccaGGCgUUg -3'
miRNA:   3'- -GAGCUCCCGGGACUUGUGc-----CCGgGAg -5'
28361 5' -61.5 NC_005946.1 + 14901 0.67 0.474612
Target:  5'- uCUUGu-GGCCCgcuaugGGAgACGGaGCCCUCg -3'
miRNA:   3'- -GAGCucCCGGGa-----CUUgUGCC-CGGGAG- -5'
28361 5' -61.5 NC_005946.1 + 21744 0.68 0.465343
Target:  5'- uUUGucauGGCCCUGAGCGCGaGCCC-Cg -3'
miRNA:   3'- gAGCuc--CCGGGACUUGUGCcCGGGaG- -5'
28361 5' -61.5 NC_005946.1 + 94711 0.68 0.465343
Target:  5'- --aGAGGGUUCc--ACGgGGGCCCUCa -3'
miRNA:   3'- gagCUCCCGGGacuUGUgCCCGGGAG- -5'
28361 5' -61.5 NC_005946.1 + 80380 0.68 0.444389
Target:  5'- --aGAGGaccagccugucccuGCCUUcGGACAgGGGCCCUCc -3'
miRNA:   3'- gagCUCC--------------CGGGA-CUUGUgCCCGGGAG- -5'
28361 5' -61.5 NC_005946.1 + 2317 0.69 0.411827
Target:  5'- -cCGGGGaGCUCgUGAGCAgGGuGUCCUCg -3'
miRNA:   3'- gaGCUCC-CGGG-ACUUGUgCC-CGGGAG- -5'
28361 5' -61.5 NC_005946.1 + 36240 0.69 0.370254
Target:  5'- --gGAGcGGCCUUGAGgACGGaagagacacaaGCCCUCa -3'
miRNA:   3'- gagCUC-CCGGGACUUgUGCC-----------CGGGAG- -5'
28361 5' -61.5 NC_005946.1 + 9729 0.7 0.339123
Target:  5'- cCUUGGacuGGGCCCUGGACAUGacGGCCaUCc -3'
miRNA:   3'- -GAGCU---CCCGGGACUUGUGC--CCGGgAG- -5'
28361 5' -61.5 NC_005946.1 + 23130 0.7 0.331643
Target:  5'- uUUGGGGGUCUUGAugACGccccuGGCgCCUCa -3'
miRNA:   3'- gAGCUCCCGGGACUugUGC-----CCG-GGAG- -5'
28361 5' -61.5 NC_005946.1 + 36474 0.7 0.324285
Target:  5'- -cCGGGGGUCCUGGucccaaacgGCA-GGGCCCa- -3'
miRNA:   3'- gaGCUCCCGGGACU---------UGUgCCCGGGag -5'
28361 5' -61.5 NC_005946.1 + 35781 0.71 0.317049
Target:  5'- cCUUGAGGaCCCUGAuC-CuGGCCCUCg -3'
miRNA:   3'- -GAGCUCCcGGGACUuGuGcCCGGGAG- -5'
28361 5' -61.5 NC_005946.1 + 82678 0.72 0.263544
Target:  5'- gUCgGAGGGCCCU--ACGCGGGugcaauggcuCCCUCc -3'
miRNA:   3'- gAG-CUCCCGGGAcuUGUGCCC----------GGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.