miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28362 3' -54.6 NC_005946.1 + 38939 0.66 0.880222
Target:  5'- aGACUuUCUCCcaGCUGGAGACu--- -3'
miRNA:   3'- aCUGAcAGAGGaaCGGCCUCUGugag -5'
28362 3' -54.6 NC_005946.1 + 38909 0.66 0.880222
Target:  5'- aGACUuUCUCCcaGCUGGAGACu--- -3'
miRNA:   3'- aCUGAcAGAGGaaCGGCCUCUGugag -5'
28362 3' -54.6 NC_005946.1 + 38879 0.66 0.880222
Target:  5'- aGACUuUCUCCcaGCUGGAGACu--- -3'
miRNA:   3'- aCUGAcAGAGGaaCGGCCUCUGugag -5'
28362 3' -54.6 NC_005946.1 + 38849 0.66 0.880222
Target:  5'- aGACUuUCUCCcaGCUGGAGACu--- -3'
miRNA:   3'- aCUGAcAGAGGaaCGGCCUCUGugag -5'
28362 3' -54.6 NC_005946.1 + 38819 0.66 0.880222
Target:  5'- aGACUuUCUCCcaGCUGGAGACu--- -3'
miRNA:   3'- aCUGAcAGAGGaaCGGCCUCUGugag -5'
28362 3' -54.6 NC_005946.1 + 13846 0.66 0.872742
Target:  5'- cGACgcggGUCUUacaUUUGCCGGGGAggUGCUUg -3'
miRNA:   3'- aCUGa---CAGAG---GAACGGCCUCU--GUGAG- -5'
28362 3' -54.6 NC_005946.1 + 8984 0.66 0.872742
Target:  5'- cUGAUUGUCU---UGCCGGGGAgcCUCu -3'
miRNA:   3'- -ACUGACAGAggaACGGCCUCUguGAG- -5'
28362 3' -54.6 NC_005946.1 + 99194 0.67 0.823201
Target:  5'- uUGACgaagGcUCUCUUgaagcUGCCGGgagAGGCGCUCc -3'
miRNA:   3'- -ACUGa---C-AGAGGA-----ACGGCC---UCUGUGAG- -5'
28362 3' -54.6 NC_005946.1 + 53098 0.68 0.766921
Target:  5'- ----aGUCUCUUUGCUGGAGACucGCa- -3'
miRNA:   3'- acugaCAGAGGAACGGCCUCUG--UGag -5'
28362 3' -54.6 NC_005946.1 + 82618 0.69 0.747015
Target:  5'- aGGCUGgacaugUC-UGCCGGAGGCugUCc -3'
miRNA:   3'- aCUGACaga---GGaACGGCCUCUGugAG- -5'
28362 3' -54.6 NC_005946.1 + 105099 0.69 0.726673
Target:  5'- -cACUgGUCUuagCCUUGCUGGAGACAaagcCUCc -3'
miRNA:   3'- acUGA-CAGA---GGAACGGCCUCUGU----GAG- -5'
28362 3' -54.6 NC_005946.1 + 38789 0.73 0.476564
Target:  5'- aGACUuUCUCCcaGCUGGAGACuuuCUCg -3'
miRNA:   3'- aCUGAcAGAGGaaCGGCCUCUGu--GAG- -5'
28362 3' -54.6 NC_005946.1 + 22386 1.1 0.002153
Target:  5'- gUGACUGUCUCCUUGCCGGAGACACUCu -3'
miRNA:   3'- -ACUGACAGAGGAACGGCCUCUGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.